Non-Coding RNA Search

reye1602b_d8.y1

Sequence:


               
               GAATAAGAAATAATGTCAAATCATCTGTCTGATAAATTACAGATTTTGACATTTCTGTTA
ATAGAGTTTCTCAGGCTCTTCCTTTTTAAAAGTACTGGACTTTACAAGAAGGTTCTGTGT
TTGGGATTCCCTTCCAGGGCAAAACCCACAGCTGAATTCCTCTTGAGACCTCCATCAACA
CTCTTGCCCTCTGTGGTCTTACATACGGTGCTAAAGGATGCATGACTCCTTATCTTGTTT
GTCTCGTTTATATTTTATTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATAAGAAATAATGTCAAATCATCTGTCTGATAAATTACAGATTTTGACATTTCTGTTA
ATAGAGTTTCTCAGGCTCTTCCTTTTTAAAAGTACTGGACTTTACAAGAAGGTTCTGTGT
TTGGGATTCCCTTCCAGGGCAAAACCCACAGCTGAATTCCTCTTGAGACCTCCATCAACA
CTCTTGCCCTCTGTGGTCTTACATACGGTGCTAAAGGATGCATGACTCCTTATCTTGTTT
GTCTCGTTTATATTTTATTCC

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-259, gnl|bosTau2|chr7 (43982244-43982503)
               

               
               1-259, gnl|canFam2|chr4 (58816320-58815946)
               

               
               1-259, gnl|dasNov1|scaffold_4608 (92933-92597)
               

               
               1-259, gnl|echTel1|scaffold_305489 (72201-72534)
               

               
               1-259, gnl|hg17|chr5 (153414154-153414528)
               

               
               1-259, gnl|Hg17|chr5 (153414306-153414563)
               

               
               1-259, gnl|loxAfr1|scaffold_15760 (17158-16769)
               

               
               1-259, gnl|mm7|chr11 (57612478-57612772)
               

               
               1-259, gnl|monDom2|scaffold_6 (52227335-52226993)
               

               
               1-259, gnl|oryCun1|scaffold_199397 (44556-44924)
               

               
               1-259, gnl|panTro1|chr4 (160333254-160333628)
               

               
               1-259, gnl|rheMac2|chr6 (150421901-150422274)
               

               
               1-259, gnl|rn3|chr10 (43132481-43132793)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-259, gnl|bosTau2|chr7 (43982244-43982503)
               

               
               1-259, gnl|canFam2|chr4 (58816320-58815946)
               

               
               1-259, gnl|dasNov1|scaffold_4608 (92933-92597)
               

               
               1-259, gnl|echTel1|scaffold_305489 (72201-72534)
               

               
               1-259, gnl|hg17|chr5 (153414154-153414528)
               

               
               1-259, gnl|Hg17|chr5 (153414306-153414563)
               

               
               1-259, gnl|loxAfr1|scaffold_15760 (17158-16769)
               

               
               1-259, gnl|mm7|chr11 (57612478-57612772)
               

               
               1-259, gnl|monDom2|scaffold_6 (52227335-52226993)
               

               
               1-259, gnl|oryCun1|scaffold_199397 (44556-44924)
               

               
               1-259, gnl|panTro1|chr4 (160333254-160333628)
               

               
               1-259, gnl|rheMac2|chr6 (150421901-150422274)
               

               
               1-259, gnl|rn3|chr10 (43132481-43132793)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eye (0.170503)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)

	1-259, gnl\|bosTau2\|chr7 (43982244-43982503)
	1-259, gnl\|canFam2\|chr4 (58816320-58815946)
	1-259, gnl\|dasNov1\|scaffold_4608 (92933-92597)
	1-259, gnl\|echTel1\|scaffold_305489 (72201-72534)
	1-259, gnl\|hg17\|chr5 (153414154-153414528)
	1-259, gnl\|Hg17\|chr5 (153414306-153414563)
	1-259, gnl\|loxAfr1\|scaffold_15760 (17158-16769)
	1-259, gnl\|mm7\|chr11 (57612478-57612772)
	1-259, gnl\|monDom2\|scaffold_6 (52227335-52226993)
	1-259, gnl\|oryCun1\|scaffold_199397 (44556-44924)
	1-259, gnl\|panTro1\|chr4 (160333254-160333628)
	1-259, gnl\|rheMac2\|chr6 (150421901-150422274)
	1-259, gnl\|rn3\|chr10 (43132481-43132793)