Non-Coding RNA Search

reye1605b_a10r1.y1

Sequence:


               
               ATGCGGTTTTAGCTTTATAGGATTTAATTTTCCCCCAAACAACAAACAACACAACAAAAA
TTCTTTAACTAGATGGTTTTAATTTAACAACGAACCTCTTGGATGAAAAAAATGAGAAAG
ATAATTTGAATGAATGGAAGGAAATGGATTTCTTAAAAAGAGTTGCATTGGAACTTAAAG
CTTGCGAAACATTAAAAAAAAAAAAAAAAAAAAAAGCGCCTCTGGCGAACAAGTTGTAAT
AGGATTAGCTTGATCTAAGAAGAGAAAGTATCATTCTGGCCACCAGGGGGAGCAACACAT
TGTCCCAGGAAGATAACAGACGAATGCAAAGATAATAGTATATATAGAACCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCGGTTTTAGCTTTATAGGATTTAATTTTCCCCCAAACAACAAACAACACAACAAAAA
TTCTTTAACTAGATGGTTTTAATTTAACAACGAACCTCTTGGATGAAAAAAATGAGAAAG
ATAATTTGAATGAATGGAAGGAAATGGATTTCTTAAAAAGAGTTGCATTGGAACTTAAAG
CTTGCGAAACATTAAAAAAAAAAAAAAAAAAAAAAGCGCCTCTGGCGAACAAGTTGTAAT
AGGATTAGCTTGATCTAAGAAGAGAAAGTATCATTCTGGCCACCAGGGGGAGCAACACAT
TGTCCCAGGAAGATAACAGACGAATGCAAAGATAATAGTATATATAGAACCTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               193-349, - strand, RNAz p=0.964745

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               193-349, - strand, RNAz p=0.964745

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               1-349, gnl|bosTau2|chr13 (25473036-25472697)
               

               
               1-349, gnl|canFam2|chr24 (4735489-4734799)
               

               
               1-349, gnl|dasNov1|scaffold_9507 (57742-57116)
               

               
               1-349, gnl|echTel1|scaffold_90255 (411-1047)
               

               
               1-349, gnl|hg17|chr20 (21648145-21648791)
               

               
               1-349, gnl|Hg17|chr20 (21648178-21648502)
               

               
               1-349, gnl|loxAfr1|scaffold_50458 (4180-3520)
               

               
               1-349, gnl|mm7|chr2 (147119649-147120299)
               

               
               1-349, gnl|Mm7|chr2 (147119681-147120037)
               

               
               1-349, gnl|monDom2|scaffold_1 (57568590-57569263)
               

               
               1-349, gnl|oryCun1|scaffold_205952 (62714-63301)
               

               
               1-349, gnl|panTro1|chr21 (21586480-21587124)
               

               
               1-349, gnl|rheMac2|chr10 (55031619-55032252)
               

               
               1-349, gnl|rn3|chr3 (135928016-135928659)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-349, gnl|bosTau2|chr13 (25473036-25472697)
               

               
               1-349, gnl|canFam2|chr24 (4735489-4734799)
               

               
               1-349, gnl|dasNov1|scaffold_9507 (57742-57116)
               

               
               1-349, gnl|echTel1|scaffold_90255 (411-1047)
               

               
               1-349, gnl|hg17|chr20 (21648145-21648791)
               

               
               1-349, gnl|Hg17|chr20 (21648178-21648502)
               

               
               1-349, gnl|loxAfr1|scaffold_50458 (4180-3520)
               

               
               1-349, gnl|mm7|chr2 (147119649-147120299)
               

               
               1-349, gnl|Mm7|chr2 (147119681-147120037)
               

               
               1-349, gnl|monDom2|scaffold_1 (57568590-57569263)
               

               
               1-349, gnl|oryCun1|scaffold_205952 (62714-63301)
               

               
               1-349, gnl|panTro1|chr21 (21586480-21587124)
               

               
               1-349, gnl|rheMac2|chr10 (55031619-55032252)
               

               
               1-349, gnl|rn3|chr3 (135928016-135928659)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eye (0.170503)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)

	1-349, gnl\|bosTau2\|chr13 (25473036-25472697)
	1-349, gnl\|canFam2\|chr24 (4735489-4734799)
	1-349, gnl\|dasNov1\|scaffold_9507 (57742-57116)
	1-349, gnl\|echTel1\|scaffold_90255 (411-1047)
	1-349, gnl\|hg17\|chr20 (21648145-21648791)
	1-349, gnl\|Hg17\|chr20 (21648178-21648502)
	1-349, gnl\|loxAfr1\|scaffold_50458 (4180-3520)
	1-349, gnl\|mm7\|chr2 (147119649-147120299)
	1-349, gnl\|Mm7\|chr2 (147119681-147120037)
	1-349, gnl\|monDom2\|scaffold_1 (57568590-57569263)
	1-349, gnl\|oryCun1\|scaffold_205952 (62714-63301)
	1-349, gnl\|panTro1\|chr21 (21586480-21587124)
	1-349, gnl\|rheMac2\|chr10 (55031619-55032252)
	1-349, gnl\|rn3\|chr3 (135928016-135928659)