Non-Coding RNA Search

reye1605b_k8r1.y1

Sequence:


               
               CTGACTTGTTTTTTCCAATATTTTACAGAATAATTGAACCTCTGACCTCTAGATGTTCTA
AATTCCGCTTCAAACCTCTGTCAGATAAAATTCAACAGCAGCGATTACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGACTTGTTTTTTCCAATATTTTACAGAATAATTGAACCTCTGACCTCTAGATGTTCTA
AATTCCGCTTCAAACCTCTGTCAGATAAAATTCAACAGCAGCGATTACT

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               2-109, gnl|bosTau2|chr1 (49534244-49534136)
               

               
               2-109, gnl|canFam2|chr34 (22372287-22372458)
               

               
               2-109, gnl|danRer3|chr9 (5008462-5008331)
               

               
               2-109, gnl|dasNov1|scaffold_138028 (3738-3573)
               

               
               2-109, gnl|echTel1|scaffold_313097 (34564-34401)
               

               
               2-109, gnl|fr1|chrUn (223911752-223911624)
               

               
               2-109, gnl|galGal2|chr9 (15496046-15496196)
               

               
               2-109, gnl|hg17|chr3 (187992955-187993127)
               

               
               2-109, gnl|Hg17|chr3 (187993128-187993021)
               

               
               2-109, gnl|loxAfr1|scaffold_22044 (4720-4883)
               

               
               2-109, gnl|mm7|chr16 (22773971-22774140)
               

               
               2-109, gnl|Mm7|chr16 (22774151-22774037)
               

               
               2-109, gnl|monDom2|scaffold_28 (23811339-23811500)
               

               
               2-109, gnl|oryCun1|scaffold_206335 (8409-8243)
               

               
               2-109, gnl|panTro1|chr2 (192084922-192085094)
               

               
               2-109, gnl|rheMac2|chr2 (179149825-179149997)
               

               
               2-109, gnl|rn3|chr11 (80007355-80007190)
               

               
               2-109, gnl|tetNig1|chrUn_random (49500399-49500267)
               

               
               2-109, gnl|xenTro1|scaffold_344 (935970-936134)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-109, gnl|bosTau2|chr1 (49534244-49534136)
               

               
               2-109, gnl|canFam2|chr34 (22372287-22372458)
               

               
               2-109, gnl|danRer3|chr9 (5008462-5008331)
               

               
               2-109, gnl|dasNov1|scaffold_138028 (3738-3573)
               

               
               2-109, gnl|echTel1|scaffold_313097 (34564-34401)
               

               
               2-109, gnl|fr1|chrUn (223911752-223911624)
               

               
               2-109, gnl|galGal2|chr9 (15496046-15496196)
               

               
               2-109, gnl|hg17|chr3 (187992955-187993127)
               

               
               2-109, gnl|Hg17|chr3 (187993128-187993021)
               

               
               2-109, gnl|loxAfr1|scaffold_22044 (4720-4883)
               

               
               2-109, gnl|mm7|chr16 (22773971-22774140)
               

               
               2-109, gnl|Mm7|chr16 (22774151-22774037)
               

               
               2-109, gnl|monDom2|scaffold_28 (23811339-23811500)
               

               
               2-109, gnl|oryCun1|scaffold_206335 (8409-8243)
               

               
               2-109, gnl|panTro1|chr2 (192084922-192085094)
               

               
               2-109, gnl|rheMac2|chr2 (179149825-179149997)
               

               
               2-109, gnl|rn3|chr11 (80007355-80007190)
               

               
               2-109, gnl|tetNig1|chrUn_random (49500399-49500267)
               

               
               2-109, gnl|xenTro1|scaffold_344 (935970-936134)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eye (0.170503)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)

	2-109, gnl\|bosTau2\|chr1 (49534244-49534136)
	2-109, gnl\|canFam2\|chr34 (22372287-22372458)
	2-109, gnl\|danRer3\|chr9 (5008462-5008331)
	2-109, gnl\|dasNov1\|scaffold_138028 (3738-3573)
	2-109, gnl\|echTel1\|scaffold_313097 (34564-34401)
	2-109, gnl\|fr1\|chrUn (223911752-223911624)
	2-109, gnl\|galGal2\|chr9 (15496046-15496196)
	2-109, gnl\|hg17\|chr3 (187992955-187993127)
	2-109, gnl\|Hg17\|chr3 (187993128-187993021)
	2-109, gnl\|loxAfr1\|scaffold_22044 (4720-4883)
	2-109, gnl\|mm7\|chr16 (22773971-22774140)
	2-109, gnl\|Mm7\|chr16 (22774151-22774037)
	2-109, gnl\|monDom2\|scaffold_28 (23811339-23811500)
	2-109, gnl\|oryCun1\|scaffold_206335 (8409-8243)
	2-109, gnl\|panTro1\|chr2 (192084922-192085094)
	2-109, gnl\|rheMac2\|chr2 (179149825-179149997)
	2-109, gnl\|rn3\|chr11 (80007355-80007190)
	2-109, gnl\|tetNig1\|chrUn_random (49500399-49500267)
	2-109, gnl\|xenTro1\|scaffold_344 (935970-936134)