Non-Coding RNA Search

reye1614b_m23.y1

Sequence:


               
               GTTGAGCAGTGCTAACGGCCATGAAGAACGTAGCAAAAAAGTACTTTGCATTTAAAATTT
AGATCTTCTTACATGGAAGAGGTCAAATCCAGTTATAGCAAAACACCTTTACAGCAGAGG
CCATATAACCAAAAAGTCCAAAGGCCCAGCCCAGTGGACCATTTACTTCAATGATGTTCA
GTACAAAATTCCACTGCCACTAAAGACTTTGGAAAGTCCCTTTTAAGTTGTAACAGGATT
TGACTATTAGTGTGGATTTTGATAACCCTTCTTTAGTTAACTTAATGTTCTTTGAAGCTT
CATTTTTGTTACAGAGAAGTATATACTGCTTTCTTGCACCCTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGAGCAGTGCTAACGGCCATGAAGAACGTAGCAAAAAAGTACTTTGCATTTAAAATTT
AGATCTTCTTACATGGAAGAGGTCAAATCCAGTTATAGCAAAACACCTTTACAGCAGAGG
CCATATAACCAAAAAGTCCAAAGGCCCAGCCCAGTGGACCATTTACTTCAATGATGTTCA
GTACAAAATTCCACTGCCACTAAAGACTTTGGAAAGTCCCTTTTAAGTTGTAACAGGATT
TGACTATTAGTGTGGATTTTGATAACCCTTCTTTAGTTAACTTAATGTTCTTTGAAGCTT
CATTTTTGTTACAGAGAAGTATATACTGCTTTCTTGCACCCTTA

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               40-344, gnl|bosTau2|chr13 (46362778-46363083)
               

               
               40-344, gnl|canFam2|chr24 (27613327-27613891)
               

               
               40-344, gnl|dasNov1|scaffold_67584 (259-852)
               

               
               40-344, gnl|echTel1|scaffold_239813 (7215-7791)
               

               
               40-344, gnl|hg17|chr20 (33785838-33786398)
               

               
               40-344, gnl|Hg17|chr20 (33786417-33786126)
               

               
               40-344, gnl|loxAfr1|scaffold_16525 (11535-10937)
               

               
               40-344, gnl|mm7|chr2 (155915261-155915813)
               

               
               40-344, gnl|Mm7|chr2 (155915832-155915545)
               

               
               40-344, gnl|monDom2|scaffold_6 (11274056-11273545)
               

               
               40-344, gnl|oryCun1|scaffold_207612 (159791-159250)
               

               
               40-344, gnl|panTro1|chr21_random (10267636-10268196)
               

               
               40-344, gnl|rheMac2|chr10 (28808410-28807847)
               

               
               40-344, gnl|rn3|chr3 (146487897-146488476)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-344, gnl|bosTau2|chr13 (46362778-46363083)
               

               
               40-344, gnl|canFam2|chr24 (27613327-27613891)
               

               
               40-344, gnl|dasNov1|scaffold_67584 (259-852)
               

               
               40-344, gnl|echTel1|scaffold_239813 (7215-7791)
               

               
               40-344, gnl|hg17|chr20 (33785838-33786398)
               

               
               40-344, gnl|Hg17|chr20 (33786417-33786126)
               

               
               40-344, gnl|loxAfr1|scaffold_16525 (11535-10937)
               

               
               40-344, gnl|mm7|chr2 (155915261-155915813)
               

               
               40-344, gnl|Mm7|chr2 (155915832-155915545)
               

               
               40-344, gnl|monDom2|scaffold_6 (11274056-11273545)
               

               
               40-344, gnl|oryCun1|scaffold_207612 (159791-159250)
               

               
               40-344, gnl|panTro1|chr21_random (10267636-10268196)
               

               
               40-344, gnl|rheMac2|chr10 (28808410-28807847)
               

               
               40-344, gnl|rn3|chr3 (146487897-146488476)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               eye (0.170503)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)

	40-344, gnl\|bosTau2\|chr13 (46362778-46363083)
	40-344, gnl\|canFam2\|chr24 (27613327-27613891)
	40-344, gnl\|dasNov1\|scaffold_67584 (259-852)
	40-344, gnl\|echTel1\|scaffold_239813 (7215-7791)
	40-344, gnl\|hg17\|chr20 (33785838-33786398)
	40-344, gnl\|Hg17\|chr20 (33786417-33786126)
	40-344, gnl\|loxAfr1\|scaffold_16525 (11535-10937)
	40-344, gnl\|mm7\|chr2 (155915261-155915813)
	40-344, gnl\|Mm7\|chr2 (155915832-155915545)
	40-344, gnl\|monDom2\|scaffold_6 (11274056-11273545)
	40-344, gnl\|oryCun1\|scaffold_207612 (159791-159250)
	40-344, gnl\|panTro1\|chr21_random (10267636-10268196)
	40-344, gnl\|rheMac2\|chr10 (28808410-28807847)
	40-344, gnl\|rn3\|chr3 (146487897-146488476)