Non-Coding RNA Search

reye1617b_o23r1.y1

Sequence:


               
               CTTTGACAGCCTGTCCCTGGAGGCCATCCGCTGCACTGTTGAGGCTGGCTACCCTGGGGT
CCTTTCCACTCGGGACAAGTATGGCCGAGTGGTCATGCTCTTCAATATTGAGAACTGGGA
TGCCGAAGAAATCACTTTTGATGAGATCTTACAGGCATATTGTTTCATCCTGGAGAAGCT
ACTGGAGAATGAGGAAACTCAAATTAATGGCTTTTGCATCATTGAGAACTTCAAGGGCTT
TACCATGCAGCAAGCTGCTGGACTCCGGGCTTCTGATCTCAGGAAGATGGTGGACATGCT
CCAGGATTCCTTCCCAGCTCGGTTCAAAGCCATCCACTTCATCCACCAGCCATGGTACTT
CA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTGACAGCCTGTCCCTGGAGGCCATCCGCTGCACTGTTGAGGCTGGCTACCCTGGGGT
CCTTTCCACTCGGGACAAGTATGGCCGAGTGGTCATGCTCTTCAATATTGAGAACTGGGA
TGCCGAAGAAATCACTTTTGATGAGATCTTACAGGCATATTGTTTCATCCTGGAGAAGCT
ACTGGAGAATGAGGAAACTCAAATTAATGGCTTTTGCATCATTGAGAACTTCAAGGGCTT
TACCATGCAGCAAGCTGCTGGACTCCGGGCTTCTGATCTCAGGAAGATGGTGGACATGCT
CCAGGATTCCTTCCCAGCTCGGTTCAAAGCCATCCACTTCATCCACCAGCCATGGTACTT
CA

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               1-148, gnl|bosTau2|chr21 (16054179-16054326)
               

               
               1-148, gnl|canFam2|chr3 (55127250-55127463)
               

               
               1-148, gnl|danRer3|chr25 (11696911-11696722)
               

               
               1-148, gnl|dasNov1|scaffold_20179 (8751-8541)
               

               
               1-148, gnl|fr1|chrUn (252298505-252298737)
               

               
               1-148, gnl|galGal2|chr10 (13540200-13539980)
               

               
               1-148, gnl|hg17|chr15 (87559271-87559497)
               

               
               1-148, gnl|Hg17|chr15 (87559439-87559292)
               

               
               1-148, gnl|loxAfr1|scaffold_5779 (57112-57342)
               

               
               1-148, gnl|mm7|chr7 (75248246-75248457)
               

               
               1-148, gnl|Mm7|chr7 (75248399-75248252)
               

               
               1-148, gnl|monDom2|scaffold_45 (11346102-11345891)
               

               
               1-148, gnl|oryCun1|scaffold_193506 (24711-24485)
               

               
               1-148, gnl|panTro1|chr16 (88429123-88429349)
               

               
               1-148, gnl|rheMac2|chr7 (68841491-68841717)
               

               
               1-148, gnl|rn3|chr1 (135205969-135206178)
               

               
               1-148, gnl|tetNig1|chrUn_random (25842050-25841834)
               

               
               1-148, gnl|xenTro1|scaffold_130 (1378683-1378466)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-148, gnl|bosTau2|chr21 (16054179-16054326)
               

               
               1-148, gnl|canFam2|chr3 (55127250-55127463)
               

               
               1-148, gnl|danRer3|chr25 (11696911-11696722)
               

               
               1-148, gnl|dasNov1|scaffold_20179 (8751-8541)
               

               
               1-148, gnl|fr1|chrUn (252298505-252298737)
               

               
               1-148, gnl|galGal2|chr10 (13540200-13539980)
               

               
               1-148, gnl|hg17|chr15 (87559271-87559497)
               

               
               1-148, gnl|Hg17|chr15 (87559439-87559292)
               

               
               1-148, gnl|loxAfr1|scaffold_5779 (57112-57342)
               

               
               1-148, gnl|mm7|chr7 (75248246-75248457)
               

               
               1-148, gnl|Mm7|chr7 (75248399-75248252)
               

               
               1-148, gnl|monDom2|scaffold_45 (11346102-11345891)
               

               
               1-148, gnl|oryCun1|scaffold_193506 (24711-24485)
               

               
               1-148, gnl|panTro1|chr16 (88429123-88429349)
               

               
               1-148, gnl|rheMac2|chr7 (68841491-68841717)
               

               
               1-148, gnl|rn3|chr1 (135205969-135206178)
               

               
               1-148, gnl|tetNig1|chrUn_random (25842050-25841834)
               

               
               1-148, gnl|xenTro1|scaffold_130 (1378683-1378466)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eye (0.170503)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)

	1-148, gnl\|bosTau2\|chr21 (16054179-16054326)
	1-148, gnl\|canFam2\|chr3 (55127250-55127463)
	1-148, gnl\|danRer3\|chr25 (11696911-11696722)
	1-148, gnl\|dasNov1\|scaffold_20179 (8751-8541)
	1-148, gnl\|fr1\|chrUn (252298505-252298737)
	1-148, gnl\|galGal2\|chr10 (13540200-13539980)
	1-148, gnl\|hg17\|chr15 (87559271-87559497)
	1-148, gnl\|Hg17\|chr15 (87559439-87559292)
	1-148, gnl\|loxAfr1\|scaffold_5779 (57112-57342)
	1-148, gnl\|mm7\|chr7 (75248246-75248457)
	1-148, gnl\|Mm7\|chr7 (75248399-75248252)
	1-148, gnl\|monDom2\|scaffold_45 (11346102-11345891)
	1-148, gnl\|oryCun1\|scaffold_193506 (24711-24485)
	1-148, gnl\|panTro1\|chr16 (88429123-88429349)
	1-148, gnl\|rheMac2\|chr7 (68841491-68841717)
	1-148, gnl\|rn3\|chr1 (135205969-135206178)
	1-148, gnl\|tetNig1\|chrUn_random (25842050-25841834)
	1-148, gnl\|xenTro1\|scaffold_130 (1378683-1378466)