Non-Coding RNA Search

reye1620b_d22r1.y1

Sequence:


               
               GGGCACATTTTCAGCAGGATGTAGAGGGATTTAACTGTGCAGACTTCTGTTAATGTTGTT
AAATCCAGCACATAGCACCAAGCATTACCCCTAAGTGTTAATCCTTTGTAACCATTTCCC
TTGTGGCTCAGCCCTAGAAATTTTGATACTAAAGCAGTGGAATGATGACAACTATGTGTA
TTTTTCTGCTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCACATTTTCAGCAGGATGTAGAGGGATTTAACTGTGCAGACTTCTGTTAATGTTGTT
AAATCCAGCACATAGCACCAAGCATTACCCCTAAGTGTTAATCCTTTGTAACCATTTCCC
TTGTGGCTCAGCCCTAGAAATTTTGATACTAAAGCAGTGGAATGATGACAACTATGTGTA
TTTTTCTGCTCTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-102, - strand, RNAz p=0.992458

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-102, - strand, RNAz p=0.992458

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-185, gnl|bosTau2|chr6 (45419120-45419307)
               

               
               1-185, gnl|canFam2|chr13 (58995520-58996039)
               

               
               1-185, gnl|dasNov1|scaffold_30407 (10524-11039)
               

               
               1-185, gnl|echTel1|scaffold_309197 (57595-57075)
               

               
               1-185, gnl|hg17|chr4 (66017192-66017742)
               

               
               1-185, gnl|Hg17|chr4 (66017516-66017299)
               

               
               1-185, gnl|loxAfr1|scaffold_2527 (42932-42373)
               

               
               1-185, gnl|mm7|chr5 (83993338-83993817)
               

               
               1-185, gnl|Mm7|chr5 (83993604-83993432)
               

               
               1-185, gnl|monDom2|scaffold_26 (30848276-30848826)
               

               
               1-185, gnl|oryCun1|scaffold_210885 (130685-130159)
               

               
               1-185, gnl|panTro1|chr3 (80636045-80635491)
               

               
               1-185, gnl|rheMac2|chr5 (64080448-64079896)
               

               
               1-185, gnl|rn3|chr14 (25893910-25893439)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-185, gnl|bosTau2|chr6 (45419120-45419307)
               

               
               1-185, gnl|canFam2|chr13 (58995520-58996039)
               

               
               1-185, gnl|dasNov1|scaffold_30407 (10524-11039)
               

               
               1-185, gnl|echTel1|scaffold_309197 (57595-57075)
               

               
               1-185, gnl|hg17|chr4 (66017192-66017742)
               

               
               1-185, gnl|Hg17|chr4 (66017516-66017299)
               

               
               1-185, gnl|loxAfr1|scaffold_2527 (42932-42373)
               

               
               1-185, gnl|mm7|chr5 (83993338-83993817)
               

               
               1-185, gnl|Mm7|chr5 (83993604-83993432)
               

               
               1-185, gnl|monDom2|scaffold_26 (30848276-30848826)
               

               
               1-185, gnl|oryCun1|scaffold_210885 (130685-130159)
               

               
               1-185, gnl|panTro1|chr3 (80636045-80635491)
               

               
               1-185, gnl|rheMac2|chr5 (64080448-64079896)
               

               
               1-185, gnl|rn3|chr14 (25893910-25893439)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               eye (0.170503)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)

	1-185, gnl\|bosTau2\|chr6 (45419120-45419307)
	1-185, gnl\|canFam2\|chr13 (58995520-58996039)
	1-185, gnl\|dasNov1\|scaffold_30407 (10524-11039)
	1-185, gnl\|echTel1\|scaffold_309197 (57595-57075)
	1-185, gnl\|hg17\|chr4 (66017192-66017742)
	1-185, gnl\|Hg17\|chr4 (66017516-66017299)
	1-185, gnl\|loxAfr1\|scaffold_2527 (42932-42373)
	1-185, gnl\|mm7\|chr5 (83993338-83993817)
	1-185, gnl\|Mm7\|chr5 (83993604-83993432)
	1-185, gnl\|monDom2\|scaffold_26 (30848276-30848826)
	1-185, gnl\|oryCun1\|scaffold_210885 (130685-130159)
	1-185, gnl\|panTro1\|chr3 (80636045-80635491)
	1-185, gnl\|rheMac2\|chr5 (64080448-64079896)
	1-185, gnl\|rn3\|chr14 (25893910-25893439)