Non-Coding RNA Search

reye1621b_k19.y1

Sequence:


               
               CTGTGATGCTGCTGGTCTGGGATCACCACACTTTGGGAATCACTCTTTTAGGCCACGCTT
GCCTGGATGCTGAGTGCCCTTGGAGAAAGACCTATATCAGTATTACCTGGGGGCTTATTA
AATACAGATCACTGGGCCCCATCTCCAGAGTTTCAGACTCATTTATGGGGAGGGATATAG
AGGCTGAGAATTGGCATTTTCCCcaaattcccaggtgaggctaatactgctggtctggaa
accacactttgagaaccgctgGTGTCTTTATGCCATCATCAGCTCTGGGATCTGTCAGGT
ATGAAGTCAAGGCCTGTCTCTGCCACCCTGTGAGCTAAAGCTCTCTGAGCCTCAGTTTTC
CCATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTGATGCTGCTGGTCTGGGATCACCACACTTTGGGAATCACTCTTTTAGGCCACGCTT
GCCTGGATGCTGAGTGCCCTTGGAGAAAGACCTATATCAGTATTACCTGGGGGCTTATTA
AATACAGATCACTGGGCCCCATCTCCAGAGTTTCAGACTCATTTATGGGGAGGGATATAG
AGGCTGAGAATTGGCATTTTCCCcaaattcccaggtgaggctaatactgctggtctggaa
accacactttgagaaccgctgGTGTCTTTATGCCATCATCAGCTCTGGGATCTGTCAGGT
ATGAAGTCAAGGCCTGTCTCTGCCACCCTGTGAGCTAAAGCTCTCTGAGCCTCAGTTTTC
CCATC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               187-295, - strand, RNAz p=0.597847

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               187-295, - strand, RNAz p=0.597847

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

Help | Less info


               
               73-365, gnl|bosTau2|chr21 (14207692-14207396)
               

               
               73-365, gnl|canFam2|chr3 (54183822-54184152)
               

               
               73-365, gnl|dasNov1|scaffold_1597 (20771-21073)
               

               
               73-365, gnl|hg17|chr15 (86417186-86417525)
               

               
               73-365, gnl|Hg17|chr15 (86417518-86417240)
               

               
               73-365, gnl|panTro1|chr16 (87266262-87266601)
               

               
               73-365, gnl|rheMac2|chr7 (67690446-67690785)
               

               
               73-365, gnl|rn3|chr1 (134199112-134199315)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               73-365, gnl|bosTau2|chr21 (14207692-14207396)
               

               
               73-365, gnl|canFam2|chr3 (54183822-54184152)
               

               
               73-365, gnl|dasNov1|scaffold_1597 (20771-21073)
               

               
               73-365, gnl|hg17|chr15 (86417186-86417525)
               

               
               73-365, gnl|Hg17|chr15 (86417518-86417240)
               

               
               73-365, gnl|panTro1|chr16 (87266262-87266601)
               

               
               73-365, gnl|rheMac2|chr7 (67690446-67690785)
               

               
               73-365, gnl|rn3|chr1 (134199112-134199315)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eye (0.170503)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)

	73-365, gnl\|bosTau2\|chr21 (14207692-14207396)
	73-365, gnl\|canFam2\|chr3 (54183822-54184152)
	73-365, gnl\|dasNov1\|scaffold_1597 (20771-21073)
	73-365, gnl\|hg17\|chr15 (86417186-86417525)
	73-365, gnl\|Hg17\|chr15 (86417518-86417240)
	73-365, gnl\|panTro1\|chr16 (87266262-87266601)
	73-365, gnl\|rheMac2\|chr7 (67690446-67690785)
	73-365, gnl\|rn3\|chr1 (134199112-134199315)