Non-Coding RNA Search

reye1623b_n7r1.y1

Sequence:


               
               CTCTGGACTCTTCTTCAAAGCTTATAATAAAGCAGTCTTCCAGAAGCTCTTTCAGAGGAG
CTGCTACCTTCTGTTATATGATTTACTTAGCGCTTAAAATATTGCTCAGTGATTTAGGGT
TGGGTGGCTCCAGTGGGCAGCCGGCGTTGCCCGGTGGCCTGTGGGATGACCAGCAGAGTG
TGCGCTGTGGCCAGCAGGGGGAGGGAGCAGAAGTGGCTGCCACCCTGAAAACTCGGGTGG
CCCTCTGGCCAGGGAGTGTCTCTGCAGTCACAGGAGGAGATCCAGGCTCTCCAGTGCGAA
ATGGGGTCATTCTGGAATCTGCAGGGGGCTGCAGAAGAACCACTTTGACTAAATAGCACA
TGAACCACAAAGAAGTTCTGTAGCTTGCCAGTTTCAAACACTAGCTTAATGACTACAAGC
AGAAGTTTACAGGCGGGGGAGGACAGTGTCCAAGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTGGACTCTTCTTCAAAGCTTATAATAAAGCAGTCTTCCAGAAGCTCTTTCAGAGGAG
CTGCTACCTTCTGTTATATGATTTACTTAGCGCTTAAAATATTGCTCAGTGATTTAGGGT
TGGGTGGCTCCAGTGGGCAGCCGGCGTTGCCCGGTGGCCTGTGGGATGACCAGCAGAGTG
TGCGCTGTGGCCAGCAGGGGGAGGGAGCAGAAGTGGCTGCCACCCTGAAAACTCGGGTGG
CCCTCTGGCCAGGGAGTGTCTCTGCAGTCACAGGAGGAGATCCAGGCTCTCCAGTGCGAA
ATGGGGTCATTCTGGAATCTGCAGGGGGCTGCAGAAGAACCACTTTGACTAAATAGCACA
TGAACCACAAAGAAGTTCTGTAGCTTGCCAGTTTCAAACACTAGCTTAATGACTACAAGC
AGAAGTTTACAGGCGGGGGAGGACAGTGTCCAAGAC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               81-270, - strand, RNAz p=0.966312
               

               
               111-227, + strand, RNAz p=0.997172

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-270, - strand, RNAz p=0.966312
               

               
               111-227, + strand, RNAz p=0.997172

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-323, gnl|bosTau2|chr4 (39517714-39517385)
               

               
               1-323, gnl|canFam2|chr14 (43981786-43982104)
               

               
               1-323, gnl|echTel1|scaffold_324408 (756-425)
               

               
               1-323, gnl|hg17|chr7 (27741913-27742236)
               

               
               1-323, gnl|Hg17|chr7 (27741972-27742303)
               

               
               1-323, gnl|loxAfr1|scaffold_10238 (10172-10499)
               

               
               1-323, gnl|mm7|chr6 (52809578-52809796)
               

               
               1-323, gnl|Mm7|chr6 (52809588-52809859)
               

               
               1-323, gnl|oryCun1|scaffold_188609 (143226-142926)
               

               
               1-323, gnl|panTro1|chr6 (28873528-28873847)
               

               
               1-323, gnl|rheMac2|chr3 (98294378-98294053)
               

               
               1-323, gnl|rn3|chr4 (81454308-81454524)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-323, gnl|bosTau2|chr4 (39517714-39517385)
               

               
               1-323, gnl|canFam2|chr14 (43981786-43982104)
               

               
               1-323, gnl|echTel1|scaffold_324408 (756-425)
               

               
               1-323, gnl|hg17|chr7 (27741913-27742236)
               

               
               1-323, gnl|Hg17|chr7 (27741972-27742303)
               

               
               1-323, gnl|loxAfr1|scaffold_10238 (10172-10499)
               

               
               1-323, gnl|mm7|chr6 (52809578-52809796)
               

               
               1-323, gnl|Mm7|chr6 (52809588-52809859)
               

               
               1-323, gnl|oryCun1|scaffold_188609 (143226-142926)
               

               
               1-323, gnl|panTro1|chr6 (28873528-28873847)
               

               
               1-323, gnl|rheMac2|chr3 (98294378-98294053)
               

               
               1-323, gnl|rn3|chr4 (81454308-81454524)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eye (0.170503)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)

	81-270, - strand, RNAz p=0.966312
	111-227, + strand, RNAz p=0.997172

	1-323, gnl\|bosTau2\|chr4 (39517714-39517385)
	1-323, gnl\|canFam2\|chr14 (43981786-43982104)
	1-323, gnl\|echTel1\|scaffold_324408 (756-425)
	1-323, gnl\|hg17\|chr7 (27741913-27742236)
	1-323, gnl\|Hg17\|chr7 (27741972-27742303)
	1-323, gnl\|loxAfr1\|scaffold_10238 (10172-10499)
	1-323, gnl\|mm7\|chr6 (52809578-52809796)
	1-323, gnl\|Mm7\|chr6 (52809588-52809859)
	1-323, gnl\|oryCun1\|scaffold_188609 (143226-142926)
	1-323, gnl\|panTro1\|chr6 (28873528-28873847)
	1-323, gnl\|rheMac2\|chr3 (98294378-98294053)
	1-323, gnl\|rn3\|chr4 (81454308-81454524)