Non-Coding RNA Search

reye1624b_g6.y1

Sequence:


               
               TTCCCAGAGGAGGTGGCATTTTCATTTAACAATATGGACCTGAGCCAGACCACAGCCCAC
AAATCCCAGCTCTGCCACGTTCATGCAGTTGACAGATACTTACTGAGCACCTACTGCATA
CCAGGCCCTATACATCTCCTAGAGAGACAGCTAAGAACAAAGCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCCAGAGGAGGTGGCATTTTCATTTAACAATATGGACCTGAGCCAGACCACAGCCCAC
AAATCCCAGCTCTGCCACGTTCATGCAGTTGACAGATACTTACTGAGCACCTACTGCATA
CCAGGCCCTATACATCTCCTAGAGAGACAGCTAAGAACAAAGCTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               72-161, - strand, RNAz p=0.74396

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               72-161, - strand, RNAz p=0.74396

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               1-161, gnl|bosTau2|chr7 (13892582-13892745)
               

               
               1-161, gnl|canFam2|chr20 (56644121-56643849)
               

               
               1-161, gnl|dasNov1|scaffold_138241 (860-1143)
               

               
               1-161, gnl|hg17|chr19 (6451782-6452063)
               

               
               1-161, gnl|Hg17|chr19 (6452085-6451928)
               

               
               1-161, gnl|panTro1|chr20 (6821417-6821698)
               

               
               1-161, gnl|rheMac2|chr19 (6405721-6406008)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-161, gnl|bosTau2|chr7 (13892582-13892745)
               

               
               1-161, gnl|canFam2|chr20 (56644121-56643849)
               

               
               1-161, gnl|dasNov1|scaffold_138241 (860-1143)
               

               
               1-161, gnl|hg17|chr19 (6451782-6452063)
               

               
               1-161, gnl|Hg17|chr19 (6452085-6451928)
               

               
               1-161, gnl|panTro1|chr20 (6821417-6821698)
               

               
               1-161, gnl|rheMac2|chr19 (6405721-6406008)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eye (0.170503)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)

	1-161, gnl\|bosTau2\|chr7 (13892582-13892745)
	1-161, gnl\|canFam2\|chr20 (56644121-56643849)
	1-161, gnl\|dasNov1\|scaffold_138241 (860-1143)
	1-161, gnl\|hg17\|chr19 (6451782-6452063)
	1-161, gnl\|Hg17\|chr19 (6452085-6451928)
	1-161, gnl\|panTro1\|chr20 (6821417-6821698)
	1-161, gnl\|rheMac2\|chr19 (6405721-6406008)