Non-Coding RNA Search

reye1632b_k21.y1

Sequence:


               
               AAGGGGACAGAATGAGTGAGGCAGTTGCCACCATGCACACTGATCATGTGACTCCAGTTG
TTGGGAACCAAAGGAGCGGGCAAGCCCAGCTTGGAGCAGGAACAGCCAGAAATCAATACT
TCCCCAGTGCCAGGAGGAGGAGTGAGGGGAGGGACTGGGTGGGTGTGCCTGGATAAGGGT
GAAAGCAGCTTTGAGTCTTGGAACCAGGAGCTCCCTATGGGCTATGGGGACTGGAGGGGG
TAGGGGCTTGCCTTCCCTGAGCTGCTTGATGGGGAGTACAGAGGAAGGTGGCCCAGAGCT
GGGGTGGAAACTGAAAAACAGGCTTATCTGAGTCTCCTAGATACTTCTGAAGCCCAGGAT
CACCAACATCCCAGATGCTGCAGATTGCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGGGACAGAATGAGTGAGGCAGTTGCCACCATGCACACTGATCATGTGACTCCAGTTG
TTGGGAACCAAAGGAGCGGGCAAGCCCAGCTTGGAGCAGGAACAGCCAGAAATCAATACT
TCCCCAGTGCCAGGAGGAGGAGTGAGGGGAGGGACTGGGTGGGTGTGCCTGGATAAGGGT
GAAAGCAGCTTTGAGTCTTGGAACCAGGAGCTCCCTATGGGCTATGGGGACTGGAGGGGG
TAGGGGCTTGCCTTCCCTGAGCTGCTTGATGGGGAGTACAGAGGAAGGTGGCCCAGAGCT
GGGGTGGAAACTGAAAAACAGGCTTATCTGAGTCTCCTAGATACTTCTGAAGCCCAGGAT
CACCAACATCCCAGATGCTGCAGATTGCTGG

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               1-364, gnl|bosTau2|chr7 (28465284-28465673)
               

               
               1-364, gnl|canFam2|chr11 (24126411-24126826)
               

               
               1-364, gnl|echTel1|scaffold_295905 (3312-3690)
               

               
               1-364, gnl|hg17|chr5 (132191372-132191749)
               

               
               1-364, gnl|Hg17|chr5 (132191376-132191755)
               

               
               1-364, gnl|mm7|chr11 (53418756-53418412)
               

               
               1-364, gnl|Mm7|chr11 (53418750-53418400)
               

               
               1-364, gnl|oryCun1|scaffold_193270 (9651-9360)
               

               
               1-364, gnl|panTro1|chr4 (138529158-138529535)
               

               
               1-364, gnl|rheMac2|chr6 (129234838-129235214)
               

               
               1-364, gnl|rn3|chr10 (38935913-38935585)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-364, gnl|bosTau2|chr7 (28465284-28465673)
               

               
               1-364, gnl|canFam2|chr11 (24126411-24126826)
               

               
               1-364, gnl|echTel1|scaffold_295905 (3312-3690)
               

               
               1-364, gnl|hg17|chr5 (132191372-132191749)
               

               
               1-364, gnl|Hg17|chr5 (132191376-132191755)
               

               
               1-364, gnl|mm7|chr11 (53418756-53418412)
               

               
               1-364, gnl|Mm7|chr11 (53418750-53418400)
               

               
               1-364, gnl|oryCun1|scaffold_193270 (9651-9360)
               

               
               1-364, gnl|panTro1|chr4 (138529158-138529535)
               

               
               1-364, gnl|rheMac2|chr6 (129234838-129235214)
               

               
               1-364, gnl|rn3|chr10 (38935913-38935585)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eye (0.170503)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)

	1-364, gnl\|bosTau2\|chr7 (28465284-28465673)
	1-364, gnl\|canFam2\|chr11 (24126411-24126826)
	1-364, gnl\|echTel1\|scaffold_295905 (3312-3690)
	1-364, gnl\|hg17\|chr5 (132191372-132191749)
	1-364, gnl\|Hg17\|chr5 (132191376-132191755)
	1-364, gnl\|mm7\|chr11 (53418756-53418412)
	1-364, gnl\|Mm7\|chr11 (53418750-53418400)
	1-364, gnl\|oryCun1\|scaffold_193270 (9651-9360)
	1-364, gnl\|panTro1\|chr4 (138529158-138529535)
	1-364, gnl\|rheMac2\|chr6 (129234838-129235214)
	1-364, gnl\|rn3\|chr10 (38935913-38935585)