Non-Coding RNA Search

rfat0102_f1.y1

Sequence:


               
               GAAAAGAAAGGTTGAGGGCCTCACATAAAGTCATTAAAACCTTCTATAAATAAAGGTAAT
TAAAATATGTGGTACTGATTGAGCAAAGGACAGTCAATTCAGTTGAATGGATAGCTCATC
TAGAAACATTCTCAAGATATTTAGTGACTTAGTGTATGGCAAAACTTGGTACTGAAATCA
GTGATAAGAGGCTGGGTCATTCAAAAAAGGCTATTGTGTGTCTCTCACAATGGTGAAATG
ATACATGTCTCTTACCTTACATCAAATTAATTCCAGGTGGACTAATTACAGAAATATTCA
AAAAAGTCTTGAATTTCTGGAATAAAATATGGGTGACTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAAGAAAGGTTGAGGGCCTCACATAAAGTCATTAAAACCTTCTATAAATAAAGGTAAT
TAAAATATGTGGTACTGATTGAGCAAAGGACAGTCAATTCAGTTGAATGGATAGCTCATC
TAGAAACATTCTCAAGATATTTAGTGACTTAGTGTATGGCAAAACTTGGTACTGAAATCA
GTGATAAGAGGCTGGGTCATTCAAAAAAGGCTATTGTGTGTCTCTCACAATGGTGAAATG
ATACATGTCTCTTACCTTACATCAAATTAATTCCAGGTGGACTAATTACAGAAATATTCA
AAAAAGTCTTGAATTTCTGGAATAAAATATGGGTGACTA

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-222, gnl|bosTau2|chr3 (80216179-80215961)
               

               
               1-222, gnl|canFam2|chr7 (68805638-68805321)
               

               
               1-222, gnl|hg17|chr18 (18219972-18220294)
               

               
               1-222, gnl|Hg17|chr18 (18220353-18220136)
               

               
               1-222, gnl|oryCun1|scaffold_176594 (36883-37244)
               

               
               1-222, gnl|panTro1|chr17 (14123336-14123659)
               

               
               1-222, gnl|rheMac2|chr18 (15404614-15404943)
               


               
               238-339, gnl|bosTau2|chr3 (80215913-80215810)
               

               
               238-339, gnl|canFam2|chr7 (68805638-68805321)
               

               
               238-339, gnl|hg17|chr18 (18219972-18220294)
               

               
               238-339, gnl|Hg17|chr18 (18220106-18220001)
               

               
               238-339, gnl|oryCun1|scaffold_176594 (36883-37244)
               

               
               238-339, gnl|panTro1|chr17 (14123336-14123659)
               

               
               238-339, gnl|rheMac2|chr18 (15404614-15404943)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-222, gnl|bosTau2|chr3 (80216179-80215961)
               

               
               1-222, gnl|canFam2|chr7 (68805638-68805321)
               

               
               1-222, gnl|hg17|chr18 (18219972-18220294)
               

               
               1-222, gnl|Hg17|chr18 (18220353-18220136)
               

               
               1-222, gnl|oryCun1|scaffold_176594 (36883-37244)
               

               
               1-222, gnl|panTro1|chr17 (14123336-14123659)
               

               
               1-222, gnl|rheMac2|chr18 (15404614-15404943)
               


               
               238-339, gnl|bosTau2|chr3 (80215913-80215810)
               

               
               238-339, gnl|canFam2|chr7 (68805638-68805321)
               

               
               238-339, gnl|hg17|chr18 (18219972-18220294)
               

               
               238-339, gnl|Hg17|chr18 (18220106-18220001)
               

               
               238-339, gnl|oryCun1|scaffold_176594 (36883-37244)
               

               
               238-339, gnl|panTro1|chr17 (14123336-14123659)
               

               
               238-339, gnl|rheMac2|chr18 (15404614-15404943)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fat (0.147427)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)

	1-222, gnl\|bosTau2\|chr3 (80216179-80215961)
	1-222, gnl\|canFam2\|chr7 (68805638-68805321)
	1-222, gnl\|hg17\|chr18 (18219972-18220294)
	1-222, gnl\|Hg17\|chr18 (18220353-18220136)
	1-222, gnl\|oryCun1\|scaffold_176594 (36883-37244)
	1-222, gnl\|panTro1\|chr17 (14123336-14123659)
	1-222, gnl\|rheMac2\|chr18 (15404614-15404943)

	238-339, gnl\|bosTau2\|chr3 (80215913-80215810)
	238-339, gnl\|canFam2\|chr7 (68805638-68805321)
	238-339, gnl\|hg17\|chr18 (18219972-18220294)
	238-339, gnl\|Hg17\|chr18 (18220106-18220001)
	238-339, gnl\|oryCun1\|scaffold_176594 (36883-37244)
	238-339, gnl\|panTro1\|chr17 (14123336-14123659)
	238-339, gnl\|rheMac2\|chr18 (15404614-15404943)