Non-Coding RNA Search

rfat0114_c19.y1

Sequence:


               
               GGGTCTGAATGCCCAGGTCAAGGATAGGTACTAGGTTTTGTTCTTCATAGTGATGTAAGG
AACTACTAACACTCTAGGCTGGATCATTCTCTGCAGGAGGTGCTAGCCTGTCCTTTGCAG
AATGTCTGGCAGTTCCCTGGTCTCTACTCACCAGATGCTAGTAGCACGTGCACCCCTACC
CCACAGTCTGACAACCAATAATTTCTCCAAAAAAGGCCAGTGTCCCAGGGGGTCAGGGTG
AAGCCAAATTGCAGCTGGTTGAGAACAATTGTATTAATAGAAAATTTACTTAATTTCTAA
ATTCTGACACAAGTTTAGAAACCTGAAACAAAATAGTTGTTTTTGTTTGGTAAGGCTGTA
AGGGCAAGATCAAAGTGTGATTAAACTAATACCACCAGTAGCAATATAAGAGAAAGAGCC
CAGGGATGCAGAGTATTGACTGACAACCAAATATCCAATTTCATTTATAATTTGGGCAAA
TTATAATCTGTTTGACCCCATCTCCTCATCTATAAAGGGTAGGAATAACTATAATGATCA
ATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTCTGAATGCCCAGGTCAAGGATAGGTACTAGGTTTTGTTCTTCATAGTGATGTAAGG
AACTACTAACACTCTAGGCTGGATCATTCTCTGCAGGAGGTGCTAGCCTGTCCTTTGCAG
AATGTCTGGCAGTTCCCTGGTCTCTACTCACCAGATGCTAGTAGCACGTGCACCCCTACC
CCACAGTCTGACAACCAATAATTTCTCCAAAAAAGGCCAGTGTCCCAGGGGGTCAGGGTG
AAGCCAAATTGCAGCTGGTTGAGAACAATTGTATTAATAGAAAATTTACTTAATTTCTAA
ATTCTGACACAAGTTTAGAAACCTGAAACAAAATAGTTGTTTTTGTTTGGTAAGGCTGTA
AGGGCAAGATCAAAGTGTGATTAAACTAATACCACCAGTAGCAATATAAGAGAAAGAGCC
CAGGGATGCAGAGTATTGACTGACAACCAAATATCCAATTTCATTTATAATTTGGGCAAA
TTATAATCTGTTTGACCCCATCTCCTCATCTATAAAGGGTAGGAATAACTATAATGATCA
ATT

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               99-353, gnl|bosTau2|chr7 (51784951-51784706)
               


               
               356-539, gnl|bosTau2|chr7 (51784395-51784203)
               

               
               356-539, gnl|canFam2|chr1 (101975929-101975776)
               

               
               356-539, gnl|dasNov1|scaffold_7467 (55110-54978)
               

               
               356-539, gnl|hg17|chr9 (92296522-92296666)
               

               
               356-539, gnl|Hg17|chr9 (92296738-92296554)
               

               
               356-539, gnl|mm7|chr13 (49052111-49051967)
               

               
               356-539, gnl|oryCun1|scaffold_161365 (12822-12938)
               

               
               356-539, gnl|panTro1|chrUn_random (27852821-27852965)
               

               
               356-539, gnl|rn3|chr17 (21033036-21033175)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               99-353, gnl|bosTau2|chr7 (51784951-51784706)
               


               
               356-539, gnl|bosTau2|chr7 (51784395-51784203)
               

               
               356-539, gnl|canFam2|chr1 (101975929-101975776)
               

               
               356-539, gnl|dasNov1|scaffold_7467 (55110-54978)
               

               
               356-539, gnl|hg17|chr9 (92296522-92296666)
               

               
               356-539, gnl|Hg17|chr9 (92296738-92296554)
               

               
               356-539, gnl|mm7|chr13 (49052111-49051967)
               

               
               356-539, gnl|oryCun1|scaffold_161365 (12822-12938)
               

               
               356-539, gnl|panTro1|chrUn_random (27852821-27852965)
               

               
               356-539, gnl|rn3|chr17 (21033036-21033175)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               fat (0.147427)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)

	99-353, gnl\|bosTau2\|chr7 (51784951-51784706)

	356-539, gnl\|bosTau2\|chr7 (51784395-51784203)
	356-539, gnl\|canFam2\|chr1 (101975929-101975776)
	356-539, gnl\|dasNov1\|scaffold_7467 (55110-54978)
	356-539, gnl\|hg17\|chr9 (92296522-92296666)
	356-539, gnl\|Hg17\|chr9 (92296738-92296554)
	356-539, gnl\|mm7\|chr13 (49052111-49051967)
	356-539, gnl\|oryCun1\|scaffold_161365 (12822-12938)
	356-539, gnl\|panTro1\|chrUn_random (27852821-27852965)
	356-539, gnl\|rn3\|chr17 (21033036-21033175)