Non-Coding RNA Search

rfat0116_p19r1.y1

Sequence:


               
               AGGAATTCCGAACTCGCATGGTGATGAACAACGGACTCAATCCAGTTTACAATGAAGAAT
CATTTGTGTTTCGGAAGGTGATCCTCCCTGACCTGGCGGTCTTGAGAATTGCAGTGTATG
ATGACAACAACAGGCTGATTGGCCAGAGGATTCTGCCCCTGGATGGCCTTCAGGCAGGCT
ATCGACATATCTCCCTTCGAAATGAGGGAAATAAACCTTTATCACTGCCAACAATTTTCT
GCAATATTGTTCTTAAAACATATGTGCCTGATGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAATTCCGAACTCGCATGGTGATGAACAACGGACTCAATCCAGTTTACAATGAAGAAT
CATTTGTGTTTCGGAAGGTGATCCTCCCTGACCTGGCGGTCTTGAGAATTGCAGTGTATG
ATGACAACAACAGGCTGATTGGCCAGAGGATTCTGCCCCTGGATGGCCTTCAGGCAGGCT
ATCGACATATCTCCCTTCGAAATGAGGGAAATAAACCTTTATCACTGCCAACAATTTTCT
GCAATATTGTTCTTAAAACATATGTGCCTGATGGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               143-262, - strand, RNAz p=0.802612

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               143-262, - strand, RNAz p=0.802612

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               63-275, gnl|bosTau2|chr13 (400200-400410)
               

               
               63-275, gnl|canFam2|chr24 (15797841-15797604)
               

               
               63-275, gnl|danRer3|chrNA (237014427-237014651)
               

               
               63-275, gnl|dasNov1|scaffold_204 (249380-249147)
               

               
               63-275, gnl|fr1|chrUn (180739765-180740001)
               

               
               63-275, gnl|galGal2|chr14 (18240147-18240387)
               

               
               63-275, gnl|hg17|chr20 (9352379-9352615)
               

               
               63-275, gnl|Hg17|chr20 (9352383-9352592)
               

               
               63-275, gnl|loxAfr1|scaffold_5658 (57230-56992)
               

               
               63-275, gnl|mm7|chr2 (135716934-135717172)
               

               
               63-275, gnl|Mm7|chr2 (135716941-135717149)
               

               
               63-275, gnl|monDom2|scaffold_1 (41338795-41339034)
               

               
               63-275, gnl|oryCun1|scaffold_198547 (191517-191279)
               

               
               63-275, gnl|panTro1|chr21 (9242371-9242607)
               

               
               63-275, gnl|rheMac2|chr10 (42735010-42735244)
               

               
               63-275, gnl|rn3|chr3 (123943624-123943866)
               

               
               63-275, gnl|tetNig1|chr14 (7339746-7339509)
               

               
               63-275, gnl|xenTro1|scaffold_239 (1207023-1207247)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               63-275, gnl|bosTau2|chr13 (400200-400410)
               

               
               63-275, gnl|canFam2|chr24 (15797841-15797604)
               

               
               63-275, gnl|danRer3|chrNA (237014427-237014651)
               

               
               63-275, gnl|dasNov1|scaffold_204 (249380-249147)
               

               
               63-275, gnl|fr1|chrUn (180739765-180740001)
               

               
               63-275, gnl|galGal2|chr14 (18240147-18240387)
               

               
               63-275, gnl|hg17|chr20 (9352379-9352615)
               

               
               63-275, gnl|Hg17|chr20 (9352383-9352592)
               

               
               63-275, gnl|loxAfr1|scaffold_5658 (57230-56992)
               

               
               63-275, gnl|mm7|chr2 (135716934-135717172)
               

               
               63-275, gnl|Mm7|chr2 (135716941-135717149)
               

               
               63-275, gnl|monDom2|scaffold_1 (41338795-41339034)
               

               
               63-275, gnl|oryCun1|scaffold_198547 (191517-191279)
               

               
               63-275, gnl|panTro1|chr21 (9242371-9242607)
               

               
               63-275, gnl|rheMac2|chr10 (42735010-42735244)
               

               
               63-275, gnl|rn3|chr3 (123943624-123943866)
               

               
               63-275, gnl|tetNig1|chr14 (7339746-7339509)
               

               
               63-275, gnl|xenTro1|scaffold_239 (1207023-1207247)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fat (0.147427)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)

	63-275, gnl\|bosTau2\|chr13 (400200-400410)
	63-275, gnl\|canFam2\|chr24 (15797841-15797604)
	63-275, gnl\|danRer3\|chrNA (237014427-237014651)
	63-275, gnl\|dasNov1\|scaffold_204 (249380-249147)
	63-275, gnl\|fr1\|chrUn (180739765-180740001)
	63-275, gnl\|galGal2\|chr14 (18240147-18240387)
	63-275, gnl\|hg17\|chr20 (9352379-9352615)
	63-275, gnl\|Hg17\|chr20 (9352383-9352592)
	63-275, gnl\|loxAfr1\|scaffold_5658 (57230-56992)
	63-275, gnl\|mm7\|chr2 (135716934-135717172)
	63-275, gnl\|Mm7\|chr2 (135716941-135717149)
	63-275, gnl\|monDom2\|scaffold_1 (41338795-41339034)
	63-275, gnl\|oryCun1\|scaffold_198547 (191517-191279)
	63-275, gnl\|panTro1\|chr21 (9242371-9242607)
	63-275, gnl\|rheMac2\|chr10 (42735010-42735244)
	63-275, gnl\|rn3\|chr3 (123943624-123943866)
	63-275, gnl\|tetNig1\|chr14 (7339746-7339509)
	63-275, gnl\|xenTro1\|scaffold_239 (1207023-1207247)