Non-Coding RNA Search

rfat0117_o12.y1

Sequence:


               
               AAAGAGCTGTTTAGAGCATAGTGGCTGAGCAATTGCTGAGGGTTCATTTGTGATTCGGTA
TCTTAATATTCTATGCTTTAAGTACGGCAGGCCTCTGGGCTCAGTTTCCACATCTGAGCA
GTTGCATTTTCCGAGGCCACCTCTGCTACTGAGGAATGCCGAGAAGCTTTACTTGCTATT
AGCAAAAATGCCCTGGGAACTTCACACGAAAGGCGCTGGATGGGGTGTAAATTAAATAAA
ACTGTGTCCGGCTCCAATAGCCCTCCGGTTGTAATATAATCCTTGCCCTGTTCTGAGAGG
GACACTGCCCTCAAAGGGAGGAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGAGCTGTTTAGAGCATAGTGGCTGAGCAATTGCTGAGGGTTCATTTGTGATTCGGTA
TCTTAATATTCTATGCTTTAAGTACGGCAGGCCTCTGGGCTCAGTTTCCACATCTGAGCA
GTTGCATTTTCCGAGGCCACCTCTGCTACTGAGGAATGCCGAGAAGCTTTACTTGCTATT
AGCAAAAATGCCCTGGGAACTTCACACGAAAGGCGCTGGATGGGGTGTAAATTAAATAAA
ACTGTGTCCGGCTCCAATAGCCCTCCGGTTGTAATATAATCCTTGCCCTGTTCTGAGAGG
GACACTGCCCTCAAAGGGAGGAGGA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               146-256, - strand, RNAz p=0.775389
               

               
               212-325, - strand, RNAz p=0.846907

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               146-256, - strand, RNAz p=0.775389
               

               
               212-325, - strand, RNAz p=0.846907

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               2-325, gnl|bosTau2|chr10 (49597292-49596973)
               

               
               2-325, gnl|canFam2|chr8 (38710336-38710592)
               

               
               2-325, gnl|dasNov1|scaffold_5044 (8242-7989)
               

               
               2-325, gnl|echTel1|scaffold_311133 (45716-45966)
               

               
               2-325, gnl|hg17|chr14 (60186674-60186952)
               

               
               2-325, gnl|Hg17|chr14 (60186689-60187026)
               

               
               2-325, gnl|loxAfr1|scaffold_47377 (4959-4693)
               

               
               2-325, gnl|mm7|chr12 (70997963-70998218)
               

               
               2-325, gnl|Mm7|chr12 (70997975-70998292)
               

               
               2-325, gnl|monDom2|scaffold_8 (73166922-73167181)
               

               
               2-325, gnl|oryCun1|scaffold_202186 (122941-122711)
               

               
               2-325, gnl|panTro1|chr15 (59760707-59760985)
               

               
               2-325, gnl|rheMac2|chr7 (123669238-123669518)
               

               
               2-325, gnl|rn3|chr6 (95479201-95479470)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-325, gnl|bosTau2|chr10 (49597292-49596973)
               

               
               2-325, gnl|canFam2|chr8 (38710336-38710592)
               

               
               2-325, gnl|dasNov1|scaffold_5044 (8242-7989)
               

               
               2-325, gnl|echTel1|scaffold_311133 (45716-45966)
               

               
               2-325, gnl|hg17|chr14 (60186674-60186952)
               

               
               2-325, gnl|Hg17|chr14 (60186689-60187026)
               

               
               2-325, gnl|loxAfr1|scaffold_47377 (4959-4693)
               

               
               2-325, gnl|mm7|chr12 (70997963-70998218)
               

               
               2-325, gnl|Mm7|chr12 (70997975-70998292)
               

               
               2-325, gnl|monDom2|scaffold_8 (73166922-73167181)
               

               
               2-325, gnl|oryCun1|scaffold_202186 (122941-122711)
               

               
               2-325, gnl|panTro1|chr15 (59760707-59760985)
               

               
               2-325, gnl|rheMac2|chr7 (123669238-123669518)
               

               
               2-325, gnl|rn3|chr6 (95479201-95479470)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fat (0.147427)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)

	146-256, - strand, RNAz p=0.775389
	212-325, - strand, RNAz p=0.846907

	2-325, gnl\|bosTau2\|chr10 (49597292-49596973)
	2-325, gnl\|canFam2\|chr8 (38710336-38710592)
	2-325, gnl\|dasNov1\|scaffold_5044 (8242-7989)
	2-325, gnl\|echTel1\|scaffold_311133 (45716-45966)
	2-325, gnl\|hg17\|chr14 (60186674-60186952)
	2-325, gnl\|Hg17\|chr14 (60186689-60187026)
	2-325, gnl\|loxAfr1\|scaffold_47377 (4959-4693)
	2-325, gnl\|mm7\|chr12 (70997963-70998218)
	2-325, gnl\|Mm7\|chr12 (70997975-70998292)
	2-325, gnl\|monDom2\|scaffold_8 (73166922-73167181)
	2-325, gnl\|oryCun1\|scaffold_202186 (122941-122711)
	2-325, gnl\|panTro1\|chr15 (59760707-59760985)
	2-325, gnl\|rheMac2\|chr7 (123669238-123669518)
	2-325, gnl\|rn3\|chr6 (95479201-95479470)