Non-Coding RNA Search

rfat0122_a5.y1

Sequence:


               
               CATAACAGCAGACTGGTGGCAAACCAGGACTAGAACCTGGGTCCTCTGACCCCTAGAGTC
AGTGTCCCCTGAGCCAGCTAGTGTTCTCTGGGGACGGGAACAGGGTTGGGCAGGGAGTTC
AGGAAGTGTTTGCTGGAAGAGCGGAGTTTCCAGGCTGATTTTGCAGGAGGTGAGGGAAGT
GGATTGCCTGGAGGGAGGAGGCTGTTTTGTTTGAAGCTTCGGTGCTGAGACACCAAGGGG
ACAGGATGAGCAGCCAGGTGCAGAGAAAGGCAGAGGAAGGAAGGAAGAAGGAAAGAGTCA
CGTCGAAGAGGCCACCAGAGGTAAAGACATTTGCTGTTGAAAGAGTTAAGAGTCAAGTTC
TAGAGCAAGACTCGTGTGGCAGACAGTCAGACCCGCTCTGGAAAATGTCCTGATAATCAC
GGCCAGCCAGTCAGGCTGGGGTGTTTGAAGCCTTTTGCTCACAAAACCTGGCACTATGGC
TCATTCCCAGAATGTGACATTTCCAAAATGTAAACGATTGTCTTTTTCCATAATTCAGAG
CCATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATAACAGCAGACTGGTGGCAAACCAGGACTAGAACCTGGGTCCTCTGACCCCTAGAGTC
AGTGTCCCCTGAGCCAGCTAGTGTTCTCTGGGGACGGGAACAGGGTTGGGCAGGGAGTTC
AGGAAGTGTTTGCTGGAAGAGCGGAGTTTCCAGGCTGATTTTGCAGGAGGTGAGGGAAGT
GGATTGCCTGGAGGGAGGAGGCTGTTTTGTTTGAAGCTTCGGTGCTGAGACACCAAGGGG
ACAGGATGAGCAGCCAGGTGCAGAGAAAGGCAGAGGAAGGAAGGAAGAAGGAAAGAGTCA
CGTCGAAGAGGCCACCAGAGGTAAAGACATTTGCTGTTGAAAGAGTTAAGAGTCAAGTTC
TAGAGCAAGACTCGTGTGGCAGACAGTCAGACCCGCTCTGGAAAATGTCCTGATAATCAC
GGCCAGCCAGTCAGGCTGGGGTGTTTGAAGCCTTTTGCTCACAAAACCTGGCACTATGGC
TCATTCCCAGAATGTGACATTTCCAAAATGTAAACGATTGTCTTTTTCCATAATTCAGAG
CCATTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               267-381, - strand, RNAz p=0.77444

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               267-381, - strand, RNAz p=0.77444

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               264-379, + strand, RNAmicro p=0.965586

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               264-379, + strand, RNAmicro p=0.965586

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-546, gnl|bosTau2|chr4 (50227028-50226474)
               

               
               1-546, gnl|Hg17|chr7 (127490746-127491279)
               

               
               1-546, gnl|Mm7|chr6 (29005132-29005980)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-546, gnl|bosTau2|chr4 (50227028-50226474)
               

               
               1-546, gnl|Hg17|chr7 (127490746-127491279)
               

               
               1-546, gnl|Mm7|chr6 (29005132-29005980)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fat (0.147427)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)

	1-546, gnl\|bosTau2\|chr4 (50227028-50226474)
	1-546, gnl\|Hg17\|chr7 (127490746-127491279)
	1-546, gnl\|Mm7\|chr6 (29005132-29005980)