Non-Coding RNA Search

rfat0122_e21.y1

Sequence:


               
               TTTGGTAACATTTCCATGATAAAAAGTTAAAAAATAggagttccccttgtggctcagcga
ttaaggaacccaaccagtatgcacaaggatccgggttcaatgcctggcctccctcggtgg
gttaaggatctggtgttgccatgagctgtgatgtaggtcacagatgcagcttggatccca
tgttgctgtggccgtggtgtaggccggcagccacagctctgattcgacccctagcctggg
aacctccatgtgcctcgggtgcggccgtacaaagacAAAAAAAAAAAAAAGGGTTAAATA
ATAAAATAGCATGGATTCTGGAACCAGGCCATGTGTGTTCAAATCCTAGCTTGGACACTT
CCTAGCTATGTGATCTTGGGCAAATTATTTAGCCTATCTGTGCTTTGCTTTCCTCAGCCA
CAGGATGGAAACAAAAATAGTTCCTAACTCATAGGCTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGGTAACATTTCCATGATAAAAAGTTAAAAAATAggagttccccttgtggctcagcga
ttaaggaacccaaccagtatgcacaaggatccgggttcaatgcctggcctccctcggtgg
gttaaggatctggtgttgccatgagctgtgatgtaggtcacagatgcagcttggatccca
tgttgctgtggccgtggtgtaggccggcagccacagctctgattcgacccctagcctggg
aacctccatgtgcctcgggtgcggccgtacaaagacAAAAAAAAAAAAAAGGGTTAAATA
ATAAAATAGCATGGATTCTGGAACCAGGCCATGTGTGTTCAAATCCTAGCTTGGACACTT
CCTAGCTATGTGATCTTGGGCAAATTATTTAGCCTATCTGTGCTTTGCTTTCCTCAGCCA
CAGGATGGAAACAAAAATAGTTCCTAACTCATAGGCTTGC

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

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               289-459, gnl|bosTau2|chr5 (42108867-42109037)
               

               
               289-459, gnl|canFam2|chr10 (35519123-35518927)
               

               
               289-459, gnl|hg17|chr12 (105138271-105138465)
               

               
               289-459, gnl|Hg17|chr12 (105138271-105138437)
               

               
               289-459, gnl|mm7|chr10 (84071786-84071979)
               

               
               289-459, gnl|oryCun1|scaffold_212716 (49671-49801)
               

               
               289-459, gnl|panTro1|chr10_random (1696070-1695876)
               

               
               289-459, gnl|rheMac2|chr11 (107334695-107334902)
               

               
               289-459, gnl|rn3|chr7 (21384385-21384224)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               289-459, gnl|bosTau2|chr5 (42108867-42109037)
               

               
               289-459, gnl|canFam2|chr10 (35519123-35518927)
               

               
               289-459, gnl|hg17|chr12 (105138271-105138465)
               

               
               289-459, gnl|Hg17|chr12 (105138271-105138437)
               

               
               289-459, gnl|mm7|chr10 (84071786-84071979)
               

               
               289-459, gnl|oryCun1|scaffold_212716 (49671-49801)
               

               
               289-459, gnl|panTro1|chr10_random (1696070-1695876)
               

               
               289-459, gnl|rheMac2|chr11 (107334695-107334902)
               

               
               289-459, gnl|rn3|chr7 (21384385-21384224)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               fat (0.147427)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)

	289-459, gnl\|bosTau2\|chr5 (42108867-42109037)
	289-459, gnl\|canFam2\|chr10 (35519123-35518927)
	289-459, gnl\|hg17\|chr12 (105138271-105138465)
	289-459, gnl\|Hg17\|chr12 (105138271-105138437)
	289-459, gnl\|mm7\|chr10 (84071786-84071979)
	289-459, gnl\|oryCun1\|scaffold_212716 (49671-49801)
	289-459, gnl\|panTro1\|chr10_random (1696070-1695876)
	289-459, gnl\|rheMac2\|chr11 (107334695-107334902)
	289-459, gnl\|rn3\|chr7 (21384385-21384224)