Non-Coding RNA Search

rfat0122_g18.y1

Sequence:


               
               AATAGATGCTGAAGTTCTTCAGTAACCACTCCTAGTCTCTGTGTTCCCTTAGATACTCCG
TGTACCATTTAATGTGAATAGCTAATATTGCTGTAAAGTATTAATATTGTATGATTTGAA
GACAGACTACGTGTCATTTTATTATACTCTGTCAATCTATAATATATTAGACTGATGCTC
TATCTAAAATGCTTTGAGTTTGTATAATAATATATCTTGACAAATTTTACTAGCATATGT
TATGTAATAGATGTGTATTTTTGTACTTGCAGAAACTGCTGCTAACTTTTAAAGTTGTTT
GGTTTTCAAGGCACTGATAATGGATATGTATGAAGTCCATGCTGTCTATTAAATAAAACA
CCATCCTCAGAGTTTAACAGTCCCACCAGAGTAATATTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATAGATGCTGAAGTTCTTCAGTAACCACTCCTAGTCTCTGTGTTCCCTTAGATACTCCG
TGTACCATTTAATGTGAATAGCTAATATTGCTGTAAAGTATTAATATTGTATGATTTGAA
GACAGACTACGTGTCATTTTATTATACTCTGTCAATCTATAATATATTAGACTGATGCTC
TATCTAAAATGCTTTGAGTTTGTATAATAATATATCTTGACAAATTTTACTAGCATATGT
TATGTAATAGATGTGTATTTTTGTACTTGCAGAAACTGCTGCTAACTTTTAAAGTTGTTT
GGTTTTCAAGGCACTGATAATGGATATGTATGAAGTCCATGCTGTCTATTAAATAAAACA
CCATCCTCAGAGTTTAACAGTCCCACCAGAGTAATATTGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               112-231, - strand, RNAz p=0.69701

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               112-231, - strand, RNAz p=0.69701

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               4-401, gnl|bosTau2|chr15 (7901843-7901451)
               

               
               4-401, gnl|canFam2|chr5 (25378232-25378644)
               

               
               4-401, gnl|dasNov1|scaffold_25966 (417-29)
               

               
               4-401, gnl|echTel1|scaffold_315419 (46320-45899)
               

               
               4-401, gnl|galGal2|chr1 (171510131-171510535)
               

               
               4-401, gnl|Hg17|chr11 (109953361-109952958)
               

               
               4-401, gnl|hg17|chr12 (58195860-58196249)
               

               
               4-401, gnl|loxAfr1|scaffold_88286 (2863-3268)
               

               
               4-401, gnl|mm7|chr9 (51831040-51831427)
               

               
               4-401, gnl|Mm7|chr9 (51831064-51831442)
               

               
               4-401, gnl|monDom2|scaffold_2 (131677825-131678234)
               

               
               4-401, gnl|oryCun1|scaffold_178286 (5371-5776)
               

               
               4-401, gnl|panTro1|chr10_random (23327814-23327425)
               

               
               4-401, gnl|rheMac2|chr11 (56675779-56676166)
               

               
               4-401, gnl|rn3|chr8 (55188106-55188499)
               


               
               96-371, gnl|bosTau2|chr12 (29060044-29060305)
               

               
               96-371, gnl|Hg17|chr11 (109953259-109952987)
               

               
               96-371, gnl|Mm7|chr9 (51831153-51831415)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-401, gnl|bosTau2|chr15 (7901843-7901451)
               

               
               4-401, gnl|canFam2|chr5 (25378232-25378644)
               

               
               4-401, gnl|dasNov1|scaffold_25966 (417-29)
               

               
               4-401, gnl|echTel1|scaffold_315419 (46320-45899)
               

               
               4-401, gnl|galGal2|chr1 (171510131-171510535)
               

               
               4-401, gnl|Hg17|chr11 (109953361-109952958)
               

               
               4-401, gnl|hg17|chr12 (58195860-58196249)
               

               
               4-401, gnl|loxAfr1|scaffold_88286 (2863-3268)
               

               
               4-401, gnl|mm7|chr9 (51831040-51831427)
               

               
               4-401, gnl|Mm7|chr9 (51831064-51831442)
               

               
               4-401, gnl|monDom2|scaffold_2 (131677825-131678234)
               

               
               4-401, gnl|oryCun1|scaffold_178286 (5371-5776)
               

               
               4-401, gnl|panTro1|chr10_random (23327814-23327425)
               

               
               4-401, gnl|rheMac2|chr11 (56675779-56676166)
               

               
               4-401, gnl|rn3|chr8 (55188106-55188499)
               


               
               96-371, gnl|bosTau2|chr12 (29060044-29060305)
               

               
               96-371, gnl|Hg17|chr11 (109953259-109952987)
               

               
               96-371, gnl|Mm7|chr9 (51831153-51831415)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fat (0.147427)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)

	4-401, gnl\|bosTau2\|chr15 (7901843-7901451)
	4-401, gnl\|canFam2\|chr5 (25378232-25378644)
	4-401, gnl\|dasNov1\|scaffold_25966 (417-29)
	4-401, gnl\|echTel1\|scaffold_315419 (46320-45899)
	4-401, gnl\|galGal2\|chr1 (171510131-171510535)
	4-401, gnl\|Hg17\|chr11 (109953361-109952958)
	4-401, gnl\|hg17\|chr12 (58195860-58196249)
	4-401, gnl\|loxAfr1\|scaffold_88286 (2863-3268)
	4-401, gnl\|mm7\|chr9 (51831040-51831427)
	4-401, gnl\|Mm7\|chr9 (51831064-51831442)
	4-401, gnl\|monDom2\|scaffold_2 (131677825-131678234)
	4-401, gnl\|oryCun1\|scaffold_178286 (5371-5776)
	4-401, gnl\|panTro1\|chr10_random (23327814-23327425)
	4-401, gnl\|rheMac2\|chr11 (56675779-56676166)
	4-401, gnl\|rn3\|chr8 (55188106-55188499)

	96-371, gnl\|bosTau2\|chr12 (29060044-29060305)
	96-371, gnl\|Hg17\|chr11 (109953259-109952987)
	96-371, gnl\|Mm7\|chr9 (51831153-51831415)