Non-Coding RNA Search

rfat0130_c6.y1

Sequence:


               
               ATTCTCTGTAAGTGTAGCTCAAATGGGTCAGCGTGAAGAAAAGTTAAAGAAAGCACGATG
TCAAGGTTACACGGGTGGTTAAGGCCAGGGCCTCTCCTACCACTGtgccactgacttgct
atgtgaccctgggcaagtcatttaactataatgtgcctcagttttccttctgttaaaatg
ggataataatactgacctacctcaaagggcagttttgaggCGTGACTAATGCTTTTTATA
AAGCATTTTGGGATCCTTCAGCAGAGGAATTCTCTTAAGTCCTGAGTATTTTTATAATAA
CAGTATCCACCATGAACTGTGTCCACCATGAACCCTGTGTCCTGGATGCTGTCATTAATC
TTTATGGTTCTCTCTGAGAAATTGAATAAACCCAATAGATAAGTGGTGGATAACTAGTCA
GACAGAATCTGAGAATGCATAAACTCATTGCCATGGAAACATACACAGGATACCTTTTCC
TTGATTGGGTGGGATTTTTTCCCCTTTTTATGTGGGATAGTAGTTATTTGTGGCCTAAGA
ATAATTTTGGAATAATTTCTATTAATATCAACTCTGAAGCTAGTTGTACTGATCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCTCTGTAAGTGTAGCTCAAATGGGTCAGCGTGAAGAAAAGTTAAAGAAAGCACGATG
TCAAGGTTACACGGGTGGTTAAGGCCAGGGCCTCTCCTACCACTGtgccactgacttgct
atgtgaccctgggcaagtcatttaactataatgtgcctcagttttccttctgttaaaatg
ggataataatactgacctacctcaaagggcagttttgaggCGTGACTAATGCTTTTTATA
AAGCATTTTGGGATCCTTCAGCAGAGGAATTCTCTTAAGTCCTGAGTATTTTTATAATAA
CAGTATCCACCATGAACTGTGTCCACCATGAACCCTGTGTCCTGGATGCTGTCATTAATC
TTTATGGTTCTCTCTGAGAAATTGAATAAACCCAATAGATAAGTGGTGGATAACTAGTCA
GACAGAATCTGAGAATGCATAAACTCATTGCCATGGAAACATACACAGGATACCTTTTCC
TTGATTGGGTGGGATTTTTTCCCCTTTTTATGTGGGATAGTAGTTATTTGTGGCCTAAGA
ATAATTTTGGAATAATTTCTATTAATATCAACTCTGAAGCTAGTTGTACTGATCTGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               131-248, - strand, RNAz p=0.936859

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               131-248, - strand, RNAz p=0.936859

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AF132203, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AF132203, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-597, gnl|bosTau2|chr26 (12718585-12719160)
               

               
               1-597, gnl|Hg17|chr10 (102113949-102114535)
               

               
               1-597, gnl|Mm7|chr19 (44200024-44200693)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-597, gnl|bosTau2|chr26 (12718585-12719160)
               

               
               1-597, gnl|Hg17|chr10 (102113949-102114535)
               

               
               1-597, gnl|Mm7|chr19 (44200024-44200693)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fat (0.147427)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)

	1-597, gnl\|bosTau2\|chr26 (12718585-12719160)
	1-597, gnl\|Hg17\|chr10 (102113949-102114535)
	1-597, gnl\|Mm7\|chr19 (44200024-44200693)