rfat0136_m2.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGGATCAAGATTTCAGGAGTCTTTATTCATTATCAATAATTTTGCAAATAGTGACAGA CCTATGAAGGCAACTGCTTTTCCCACAGAAGTCAAAGACTTGACTAAGAGAATCCGTACT GTTCTCATGGCCACTGCTCAAATGAAGGAGCATGAGAAAGACCCTGAAATGCTAATTGAT CTCCAGTACAGCTTAGCCAAGTCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGGATCAAGATTTCAGGAGTCTTTATTCATTATCAATAATTTTGCAAATAGTGACAGA CCTATGAAGGCAACTGCTTTTCCCACAGAAGTCAAAGACTTGACTAAGAGAATCCGTACT GTTCTCATGGCCACTGCTCAAATGAAGGAGCATGAGAAAGACCCTGAAATGCTAATTGAT CTCCAGTACAGCTTAGCCAAGTCCT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 87-205, - strand, RNAz p=0.931232 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 87-205, - strand, RNAz p=0.931232 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 68-205, gnl|bosTau2|chrX (356871-356734) | |
| 68-205, gnl|canFam2|chrX (93917999-93917780) | |
| 68-205, gnl|canFam2|chrX (93917752-93917996) | |
| 68-205, gnl|danRer3|chr16 (16621272-16621063) | |
| 68-205, gnl|danRer3|chr6 (7951565-7951351) | |
| 68-205, gnl|dasNov1|scaffold_33447 (15141-15355) | |
| 68-205, gnl|dasNov1|scaffold_33447 (15348-15140) | |
| 68-205, gnl|echTel1|scaffold_286385 (145274-145491) | |
| 68-205, gnl|echTel1|scaffold_286385 (145491-145277) | |
| 68-205, gnl|fr1|chrUn (19342837-19343049) | |
| 68-205, gnl|fr1|chrUn (19343075-19342836) | |
| 68-205, gnl|galGal2|chr4 (3188434-3188213) | |
| 68-205, gnl|galGal2|chr4 (3188186-3188431) | |
| 68-205, gnl|hg17|chr14 (44400576-44400798) | |
| 68-205, gnl|hg17|chrX (117570422-117570665) | |
| 68-205, gnl|Hg17|chrX (117570445-117570582) | |
| 68-205, gnl|loxAfr1|scaffold_21111 (41631-41850) | |
| 68-205, gnl|loxAfr1|scaffold_21111 (41876-41634) | |
| 68-205, gnl|mm7|chrX (30807038-30806816) | |
| 68-205, gnl|mm7|chrX (30806783-30807035) | |
| 68-205, gnl|Mm7|chrX (30806815-30806952) | |
| 68-205, gnl|monDom2|scaffold_146 (1082407-1082186) | |
| 68-205, gnl|monDom2|scaffold_146 (1082158-1082404) | |
| 68-205, gnl|oryCun1|scaffold_154457 (1035-1274) | |
| 68-205, gnl|oryCun1|scaffold_214940 (114576-114309) | |
| 68-205, gnl|panTro1|chr15 (43654253-43654475) | |
| 68-205, gnl|panTro1|chrX (121562373-121562616) | |
| 68-205, gnl|rheMac2|chr7 (108021592-108021814) | |
| 68-205, gnl|rheMac2|chrX (116902815-116903058) | |
| 68-205, gnl|rn3|chrX (8889092-8889311) | |
| 68-205, gnl|rn3|chrX (8889346-8889095) | |
| 68-205, gnl|tetNig1|chrUn_random (111484836-111484624) | |
| 68-205, gnl|tetNig1|chrUn_random (111484601-111484837) | |
| 68-205, gnl|xenTro1|scaffold_587 (12736-12954) | |
| 68-205, gnl|xenTro1|scaffold_587 (12966-12735) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 68-205, gnl|bosTau2|chrX (356871-356734) | |
| 68-205, gnl|canFam2|chrX (93917999-93917780) | |
| 68-205, gnl|canFam2|chrX (93917752-93917996) | |
| 68-205, gnl|danRer3|chr16 (16621272-16621063) | |
| 68-205, gnl|danRer3|chr6 (7951565-7951351) | |
| 68-205, gnl|dasNov1|scaffold_33447 (15141-15355) | |
| 68-205, gnl|dasNov1|scaffold_33447 (15348-15140) | |
| 68-205, gnl|echTel1|scaffold_286385 (145274-145491) | |
| 68-205, gnl|echTel1|scaffold_286385 (145491-145277) | |
| 68-205, gnl|fr1|chrUn (19342837-19343049) | |
| 68-205, gnl|fr1|chrUn (19343075-19342836) | |
| 68-205, gnl|galGal2|chr4 (3188434-3188213) | |
| 68-205, gnl|galGal2|chr4 (3188186-3188431) | |
| 68-205, gnl|hg17|chr14 (44400576-44400798) | |
| 68-205, gnl|hg17|chrX (117570422-117570665) | |
| 68-205, gnl|Hg17|chrX (117570445-117570582) | |
| 68-205, gnl|loxAfr1|scaffold_21111 (41631-41850) | |
| 68-205, gnl|loxAfr1|scaffold_21111 (41876-41634) | |
| 68-205, gnl|mm7|chrX (30807038-30806816) | |
| 68-205, gnl|mm7|chrX (30806783-30807035) | |
| 68-205, gnl|Mm7|chrX (30806815-30806952) | |
| 68-205, gnl|monDom2|scaffold_146 (1082407-1082186) | |
| 68-205, gnl|monDom2|scaffold_146 (1082158-1082404) | |
| 68-205, gnl|oryCun1|scaffold_154457 (1035-1274) | |
| 68-205, gnl|oryCun1|scaffold_214940 (114576-114309) | |
| 68-205, gnl|panTro1|chr15 (43654253-43654475) | |
| 68-205, gnl|panTro1|chrX (121562373-121562616) | |
| 68-205, gnl|rheMac2|chr7 (108021592-108021814) | |
| 68-205, gnl|rheMac2|chrX (116902815-116903058) | |
| 68-205, gnl|rn3|chrX (8889092-8889311) | |
| 68-205, gnl|rn3|chrX (8889346-8889095) | |
| 68-205, gnl|tetNig1|chrUn_random (111484836-111484624) | |
| 68-205, gnl|tetNig1|chrUn_random (111484601-111484837) | |
| 68-205, gnl|xenTro1|scaffold_587 (12736-12954) | |
| 68-205, gnl|xenTro1|scaffold_587 (12966-12735) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fat (0.147427) |