Non-Coding RNA Search

rfbs3906b_g22.y1

Sequence:


               
               CACCACTGCCTCTTTTTCTCCACTCCCAGCCCCATTTCCTTTTTTTCTGGAGTGTGTGGT
GAAACAAAAATCATGTTTAATAAACGGAGATTGTTCTTTTAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCACTGCCTCTTTTTCTCCACTCCCAGCCCCATTTCCTTTTTTTCTGGAGTGTGTGGT
GAAACAAAAATCATGTTTAATAAACGGAGATTGTTCTTTTAAAAAAAAAAAAAAAAAA

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-101, gnl|bosTau2|chr23 (6013127-6013229)
               

               
               1-101, gnl|canFam2|chr12 (5866049-5866238)
               

               
               1-101, gnl|dasNov1|scaffold_252612 (1283-1127)
               

               
               1-101, gnl|echTel1|scaffold_284875 (42386-42200)
               

               
               1-101, gnl|hg17|chr6 (33529284-33529464)
               

               
               1-101, gnl|Hg17|chr6 (33529342-33529444)
               

               
               1-101, gnl|mm7|chr17 (25157027-25157225)
               

               
               1-101, gnl|Mm7|chr17 (25157089-25157210)
               

               
               1-101, gnl|monDom2|scaffold_42 (14847085-14846896)
               

               
               1-101, gnl|oryCun1|scaffold_192751 (748-569)
               

               
               1-101, gnl|panTro1|chr5 (33978442-33978622)
               

               
               1-101, gnl|rheMac2|chr4 (33184938-33185119)
               

               
               1-101, gnl|rn3|chr20 (5211463-5211662)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-101, gnl|bosTau2|chr23 (6013127-6013229)
               

               
               1-101, gnl|canFam2|chr12 (5866049-5866238)
               

               
               1-101, gnl|dasNov1|scaffold_252612 (1283-1127)
               

               
               1-101, gnl|echTel1|scaffold_284875 (42386-42200)
               

               
               1-101, gnl|hg17|chr6 (33529284-33529464)
               

               
               1-101, gnl|Hg17|chr6 (33529342-33529444)
               

               
               1-101, gnl|mm7|chr17 (25157027-25157225)
               

               
               1-101, gnl|Mm7|chr17 (25157089-25157210)
               

               
               1-101, gnl|monDom2|scaffold_42 (14847085-14846896)
               

               
               1-101, gnl|oryCun1|scaffold_192751 (748-569)
               

               
               1-101, gnl|panTro1|chr5 (33978442-33978622)
               

               
               1-101, gnl|rheMac2|chr4 (33184938-33185119)
               

               
               1-101, gnl|rn3|chr20 (5211463-5211662)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fbs (0.175346)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)

	1-101, gnl\|bosTau2\|chr23 (6013127-6013229)
	1-101, gnl\|canFam2\|chr12 (5866049-5866238)
	1-101, gnl\|dasNov1\|scaffold_252612 (1283-1127)
	1-101, gnl\|echTel1\|scaffold_284875 (42386-42200)
	1-101, gnl\|hg17\|chr6 (33529284-33529464)
	1-101, gnl\|Hg17\|chr6 (33529342-33529444)
	1-101, gnl\|mm7\|chr17 (25157027-25157225)
	1-101, gnl\|Mm7\|chr17 (25157089-25157210)
	1-101, gnl\|monDom2\|scaffold_42 (14847085-14846896)
	1-101, gnl\|oryCun1\|scaffold_192751 (748-569)
	1-101, gnl\|panTro1\|chr5 (33978442-33978622)
	1-101, gnl\|rheMac2\|chr4 (33184938-33185119)
	1-101, gnl\|rn3\|chr20 (5211463-5211662)