Non-Coding RNA Search

rfbs3907b_c3.y1

Sequence:


               
               AACAGTTCAATCCCGGGCCCGGAAACTGGGGACTTCCGCATGCAGAGGGTGTGGCCAAAA
AATAGCACTGGGGTGGAGGCTTAGGGCACCAAAGAATGTCCCATGGAGGGACCAAAGGTC
ATTGGGATCTGATGATATCTCCTTTCCCCTTTCCCCTTGCAGCATTCCTCCTCCTCCTCC
TCTTCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAGTTCAATCCCGGGCCCGGAAACTGGGGACTTCCGCATGCAGAGGGTGTGGCCAAAA
AATAGCACTGGGGTGGAGGCTTAGGGCACCAAAGAATGTCCCATGGAGGGACCAAAGGTC
ATTGGGATCTGATGATATCTCCTTTCCCCTTTCCCCTTGCAGCATTCCTCCTCCTCCTCC
TCTTCCAG

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               65-188, gnl|bosTau2|chr5 (18999208-18999089)
               

               
               65-188, gnl|canFam2|chr27 (4770213-4769849)
               

               
               65-188, gnl|dasNov1|scaffold_85910 (2136-1769)
               

               
               65-188, gnl|echTel1|scaffold_297992 (33914-34225)
               

               
               65-188, gnl|hg17|chr12 (52125659-52126051)
               

               
               65-188, gnl|Hg17|chr12 (52125961-52126094)
               

               
               65-188, gnl|loxAfr1|scaffold_26963 (22729-22367)
               

               
               65-188, gnl|mm7|chr15 (102448013-102448314)
               

               
               65-188, gnl|Mm7|chr15 (102448236-102448356)
               

               
               65-188, gnl|panTro1|chr10_random (21444855-21444470)
               

               
               65-188, gnl|rheMac2|chr11 (50516902-50517290)
               

               
               65-188, gnl|rn3|chr7 (141295982-141296316)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-188, gnl|bosTau2|chr5 (18999208-18999089)
               

               
               65-188, gnl|canFam2|chr27 (4770213-4769849)
               

               
               65-188, gnl|dasNov1|scaffold_85910 (2136-1769)
               

               
               65-188, gnl|echTel1|scaffold_297992 (33914-34225)
               

               
               65-188, gnl|hg17|chr12 (52125659-52126051)
               

               
               65-188, gnl|Hg17|chr12 (52125961-52126094)
               

               
               65-188, gnl|loxAfr1|scaffold_26963 (22729-22367)
               

               
               65-188, gnl|mm7|chr15 (102448013-102448314)
               

               
               65-188, gnl|Mm7|chr15 (102448236-102448356)
               

               
               65-188, gnl|panTro1|chr10_random (21444855-21444470)
               

               
               65-188, gnl|rheMac2|chr11 (50516902-50517290)
               

               
               65-188, gnl|rn3|chr7 (141295982-141296316)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fbs (0.175346)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)

	65-188, gnl\|bosTau2\|chr5 (18999208-18999089)
	65-188, gnl\|canFam2\|chr27 (4770213-4769849)
	65-188, gnl\|dasNov1\|scaffold_85910 (2136-1769)
	65-188, gnl\|echTel1\|scaffold_297992 (33914-34225)
	65-188, gnl\|hg17\|chr12 (52125659-52126051)
	65-188, gnl\|Hg17\|chr12 (52125961-52126094)
	65-188, gnl\|loxAfr1\|scaffold_26963 (22729-22367)
	65-188, gnl\|mm7\|chr15 (102448013-102448314)
	65-188, gnl\|Mm7\|chr15 (102448236-102448356)
	65-188, gnl\|panTro1\|chr10_random (21444855-21444470)
	65-188, gnl\|rheMac2\|chr11 (50516902-50517290)
	65-188, gnl\|rn3\|chr7 (141295982-141296316)