Non-Coding RNA Search

rfbs3908b_n18.y1

Sequence:


               
               ATTAACAGATGGCTAAATTTTAATATCAAACTAACATTTTAAAACATCTAAGGGGACCCA
CATGAGGAAGAAAGGATAGATAACCATGTGTTTTCTCCATCCCTGAGCCCTTTCTTCCTC
TGCACTTTCCCTCCCCTCATTCTTCTGACCCACATGTTGAGAACCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTAACAGATGGCTAAATTTTAATATCAAACTAACATTTTAAAACATCTAAGGGGACCCA
CATGAGGAAGAAAGGATAGATAACCATGTGTTTTCTCCATCCCTGAGCCCTTTCTTCCTC
TGCACTTTCCCTCCCCTCATTCTTCTGACCCACATGTTGAGAACCAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               29-167, - strand, RNAz p=0.999571
               

               
               39-167, - strand, RNAz p=0.971733

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               29-167, - strand, RNAz p=0.999571
               

               
               39-167, - strand, RNAz p=0.971733

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               62-159, - strand, RNAmicro p=0.996197

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               62-159, - strand, RNAmicro p=0.996197

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-167, gnl|bosTau2|chr16 (28429091-28429258)
               

               
               1-167, gnl|canFam2|chr7 (29690569-29690444)
               

               
               1-167, gnl|dasNov1|scaffold_6115 (48563-48688)
               

               
               1-167, gnl|echTel1|scaffold_304231 (4442-4323)
               

               
               1-167, gnl|hg17|chr1 (168953956-168954081)
               

               
               1-167, gnl|Hg17|chr1 (168953966-168954128)
               

               
               1-167, gnl|loxAfr1|scaffold_2300 (84532-84410)
               

               
               1-167, gnl|mm7|chr1 (162096136-162096013)
               

               
               1-167, gnl|Mm7|chr1 (162096124-162095973)
               

               
               1-167, gnl|monDom2|scaffold_16 (23361830-23361956)
               

               
               1-167, gnl|oryCun1|scaffold_207037 (91029-91142)
               

               
               1-167, gnl|panTro1|chr1 (151282625-151282750)
               

               
               1-167, gnl|rheMac2|chr1 (201945481-201945606)
               

               
               1-167, gnl|rn3|chr13 (77836351-77836228)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-167, gnl|bosTau2|chr16 (28429091-28429258)
               

               
               1-167, gnl|canFam2|chr7 (29690569-29690444)
               

               
               1-167, gnl|dasNov1|scaffold_6115 (48563-48688)
               

               
               1-167, gnl|echTel1|scaffold_304231 (4442-4323)
               

               
               1-167, gnl|hg17|chr1 (168953956-168954081)
               

               
               1-167, gnl|Hg17|chr1 (168953966-168954128)
               

               
               1-167, gnl|loxAfr1|scaffold_2300 (84532-84410)
               

               
               1-167, gnl|mm7|chr1 (162096136-162096013)
               

               
               1-167, gnl|Mm7|chr1 (162096124-162095973)
               

               
               1-167, gnl|monDom2|scaffold_16 (23361830-23361956)
               

               
               1-167, gnl|oryCun1|scaffold_207037 (91029-91142)
               

               
               1-167, gnl|panTro1|chr1 (151282625-151282750)
               

               
               1-167, gnl|rheMac2|chr1 (201945481-201945606)
               

               
               1-167, gnl|rn3|chr13 (77836351-77836228)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fbs (0.175346)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)

	29-167, - strand, RNAz p=0.999571
	39-167, - strand, RNAz p=0.971733

	1-167, gnl\|bosTau2\|chr16 (28429091-28429258)
	1-167, gnl\|canFam2\|chr7 (29690569-29690444)
	1-167, gnl\|dasNov1\|scaffold_6115 (48563-48688)
	1-167, gnl\|echTel1\|scaffold_304231 (4442-4323)
	1-167, gnl\|hg17\|chr1 (168953956-168954081)
	1-167, gnl\|Hg17\|chr1 (168953966-168954128)
	1-167, gnl\|loxAfr1\|scaffold_2300 (84532-84410)
	1-167, gnl\|mm7\|chr1 (162096136-162096013)
	1-167, gnl\|Mm7\|chr1 (162096124-162095973)
	1-167, gnl\|monDom2\|scaffold_16 (23361830-23361956)
	1-167, gnl\|oryCun1\|scaffold_207037 (91029-91142)
	1-167, gnl\|panTro1\|chr1 (151282625-151282750)
	1-167, gnl\|rheMac2\|chr1 (201945481-201945606)
	1-167, gnl\|rn3\|chr13 (77836351-77836228)