Non-Coding RNA Search

rfbs3918b_e6.y1

Sequence:


               
               GTGGCAGCTCATCTCCCCTACCTCTTCCATGTTGTTACTTTCTTAGTAGCCACAGGGCCA
CTCTCCCTGCGAGCTTCCACACATGGCTTGGTCATTAATATCATTCACTCTCTGTGTACT
TGCTCACAGCTTCATTTTAGTGAAGAAACCAAGCAAGTTTTGAGACTCAGTTTGACAGAG
TTCTCCTTACCTAAATTTTACCTACTATTTGGCATTAGCAAAGTCAAGTCAGCTGCTGTC
ATTGCCTTCCGATCCAGTTACCGGGACAGGTCATTCTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGCAGCTCATCTCCCCTACCTCTTCCATGTTGTTACTTTCTTAGTAGCCACAGGGCCA
CTCTCCCTGCGAGCTTCCACACATGGCTTGGTCATTAATATCATTCACTCTCTGTGTACT
TGCTCACAGCTTCATTTTAGTGAAGAAACCAAGCAAGTTTTGAGACTCAGTTTGACAGAG
TTCTCCTTACCTAAATTTTACCTACTATTTGGCATTAGCAAAGTCAAGTCAGCTGCTGTC
ATTGCCTTCCGATCCAGTTACCGGGACAGGTCATTCTCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-142, - strand, RNAz p=0.993045

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-142, - strand, RNAz p=0.993045

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               1-134, BB624469 RIKEN full-length enriched mouse cDNA library, C57BL/6J 
(dbj|BB624469.1|), blast E-value=7e-28, identity=87.31% 
               

               
               24-142, DB291337 UTERU3 Homo sapiens cDNA clone UTERU3021690 5', mRNA 
(dbj|DB291337.1|), blast E-value=2e-40, identity=93.28% 
               

               
               24-142, 602887174F1 NCI_CGAP_Kid14 Mus musculus cDNA clone IMAGE 
(gb|BI101408.1|), blast E-value=7e-31, identity=89.92% 
               

               
               1-142, UI-M-GH0-cee-f-24-0-UI.r1 NIH_BMAP_GH0 Mus musculus cDNA clone 
(gb|CB518995.1|), blast E-value=5e-35, identity=88.73% 
               

               
               1-142, UI-M-GH0-ceq-l-04-0-UI.r1 NIH_BMAP_GH0 Mus musculus cDNA clone 
(gb|CB523284.1|), blast E-value=5e-35, identity=88.73% 
               

               
               1-142, UI-M-GI0-cho-p-07-0-UI.r1 NIH_BMAP_GI0 Mus musculus cDNA clone 
(gb|CF538200.1|), blast E-value=5e-35, identity=88.73%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               1-134, BB624469 RIKEN full-length enriched mouse cDNA library, C57BL/6J 
(dbj|BB624469.1|), blast E-value=7e-28, identity=87.31% 
               

               
               24-142, DB291337 UTERU3 Homo sapiens cDNA clone UTERU3021690 5', mRNA 
(dbj|DB291337.1|), blast E-value=2e-40, identity=93.28% 
               

               
               24-142, 602887174F1 NCI_CGAP_Kid14 Mus musculus cDNA clone IMAGE 
(gb|BI101408.1|), blast E-value=7e-31, identity=89.92% 
               

               
               1-142, UI-M-GH0-cee-f-24-0-UI.r1 NIH_BMAP_GH0 Mus musculus cDNA clone 
(gb|CB518995.1|), blast E-value=5e-35, identity=88.73% 
               

               
               1-142, UI-M-GH0-ceq-l-04-0-UI.r1 NIH_BMAP_GH0 Mus musculus cDNA clone 
(gb|CB523284.1|), blast E-value=5e-35, identity=88.73% 
               

               
               1-142, UI-M-GI0-cho-p-07-0-UI.r1 NIH_BMAP_GI0 Mus musculus cDNA clone 
(gb|CF538200.1|), blast E-value=5e-35, identity=88.73%

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               1-142, gnl|bosTau2|chr19 (9822830-9822971)
               

               
               1-142, gnl|canFam2|chr9 (44832939-44832650)
               

               
               1-142, gnl|danRer3|chr15 (35470238-35469953)
               

               
               1-142, gnl|dasNov1|scaffold_10209 (29015-28726)
               

               
               1-142, gnl|echTel1|scaffold_313108 (37755-37365)
               

               
               1-142, gnl|fr1|chrUn (193764083-193763797)
               

               
               1-142, gnl|galGal2|chr19 (8558364-8558075)
               

               
               1-142, gnl|hg17|chr17 (26687775-26688064)
               

               
               1-142, gnl|Hg17|chr17 (26687917-26688058)
               

               
               1-142, gnl|loxAfr1|scaffold_6688 (14699-14988)
               

               
               1-142, gnl|mm7|chr11 (79628542-79628831)
               

               
               1-142, gnl|Mm7|chr11 (79628684-79628825)
               

               
               1-142, gnl|monDom2|scaffold_44 (12614881-12614592)
               

               
               1-142, gnl|oryCun1|scaffold_206075 (15057-14768)
               

               
               1-142, gnl|panTro1|chr19 (30129481-30129770)
               

               
               1-142, gnl|rheMac2|chr16 (26514028-26514317)
               

               
               1-142, gnl|rn3|chr10 (65750258-65750547)
               

               
               1-142, gnl|tetNig1|chr16 (8955035-8954746)
               

               
               1-142, gnl|xenTro1|scaffold_227 (1184041-1183752)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-142, gnl|bosTau2|chr19 (9822830-9822971)
               

               
               1-142, gnl|canFam2|chr9 (44832939-44832650)
               

               
               1-142, gnl|danRer3|chr15 (35470238-35469953)
               

               
               1-142, gnl|dasNov1|scaffold_10209 (29015-28726)
               

               
               1-142, gnl|echTel1|scaffold_313108 (37755-37365)
               

               
               1-142, gnl|fr1|chrUn (193764083-193763797)
               

               
               1-142, gnl|galGal2|chr19 (8558364-8558075)
               

               
               1-142, gnl|hg17|chr17 (26687775-26688064)
               

               
               1-142, gnl|Hg17|chr17 (26687917-26688058)
               

               
               1-142, gnl|loxAfr1|scaffold_6688 (14699-14988)
               

               
               1-142, gnl|mm7|chr11 (79628542-79628831)
               

               
               1-142, gnl|Mm7|chr11 (79628684-79628825)
               

               
               1-142, gnl|monDom2|scaffold_44 (12614881-12614592)
               

               
               1-142, gnl|oryCun1|scaffold_206075 (15057-14768)
               

               
               1-142, gnl|panTro1|chr19 (30129481-30129770)
               

               
               1-142, gnl|rheMac2|chr16 (26514028-26514317)
               

               
               1-142, gnl|rn3|chr10 (65750258-65750547)
               

               
               1-142, gnl|tetNig1|chr16 (8955035-8954746)
               

               
               1-142, gnl|xenTro1|scaffold_227 (1184041-1183752)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               fbs (0.175346)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)

	1-134, BB624469 RIKEN full-length enriched mouse cDNA library, C57BL/6J (dbj\|BB624469.1\|), blast E-value=7e-28, identity=87.31%
	24-142, DB291337 UTERU3 Homo sapiens cDNA clone UTERU3021690 5', mRNA (dbj\|DB291337.1\|), blast E-value=2e-40, identity=93.28%
	24-142, 602887174F1 NCI_CGAP_Kid14 Mus musculus cDNA clone IMAGE (gb\|BI101408.1\|), blast E-value=7e-31, identity=89.92%
	1-142, UI-M-GH0-cee-f-24-0-UI.r1 NIH_BMAP_GH0 Mus musculus cDNA clone (gb\|CB518995.1\|), blast E-value=5e-35, identity=88.73%
	1-142, UI-M-GH0-ceq-l-04-0-UI.r1 NIH_BMAP_GH0 Mus musculus cDNA clone (gb\|CB523284.1\|), blast E-value=5e-35, identity=88.73%
	1-142, UI-M-GI0-cho-p-07-0-UI.r1 NIH_BMAP_GI0 Mus musculus cDNA clone (gb\|CF538200.1\|), blast E-value=5e-35, identity=88.73%

	1-142, gnl\|bosTau2\|chr19 (9822830-9822971)
	1-142, gnl\|canFam2\|chr9 (44832939-44832650)
	1-142, gnl\|danRer3\|chr15 (35470238-35469953)
	1-142, gnl\|dasNov1\|scaffold_10209 (29015-28726)
	1-142, gnl\|echTel1\|scaffold_313108 (37755-37365)
	1-142, gnl\|fr1\|chrUn (193764083-193763797)
	1-142, gnl\|galGal2\|chr19 (8558364-8558075)
	1-142, gnl\|hg17\|chr17 (26687775-26688064)
	1-142, gnl\|Hg17\|chr17 (26687917-26688058)
	1-142, gnl\|loxAfr1\|scaffold_6688 (14699-14988)
	1-142, gnl\|mm7\|chr11 (79628542-79628831)
	1-142, gnl\|Mm7\|chr11 (79628684-79628825)
	1-142, gnl\|monDom2\|scaffold_44 (12614881-12614592)
	1-142, gnl\|oryCun1\|scaffold_206075 (15057-14768)
	1-142, gnl\|panTro1\|chr19 (30129481-30129770)
	1-142, gnl\|rheMac2\|chr16 (26514028-26514317)
	1-142, gnl\|rn3\|chr10 (65750258-65750547)
	1-142, gnl\|tetNig1\|chr16 (8955035-8954746)
	1-142, gnl\|xenTro1\|scaffold_227 (1184041-1183752)