Non-Coding RNA Search

rfbs3919b_k22.y1

Sequence:


               
               GCTGATTAAGGTTGCTTGGTTTTTTACTAAACATTAACTGAATGAAAACGGGTAGTCCTT
GTTCTGCTTGGGGGGCTTTAAGGAAGCAAATGGACTTTCAGAACAGAGATTGTCAATAAA
GGTGTTGTGCCATGTTAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGATTAAGGTTGCTTGGTTTTTTACTAAACATTAACTGAATGAAAACGGGTAGTCCTT
GTTCTGCTTGGGGGGCTTTAAGGAAGCAAATGGACTTTCAGAACAGAGATTGTCAATAAA
GGTGTTGTGCCATGTTAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-124, gnl|bosTau2|chr7 (56951095-56950972)
               

               
               1-124, gnl|canFam2|chr3 (23130705-23130013)
               

               
               1-124, gnl|dasNov1|scaffold_5392 (59573-58879)
               

               
               1-124, gnl|echTel1|scaffold_316902 (38306-37595)
               

               
               1-124, gnl|hg17|chr5 (87723632-87724320)
               

               
               1-124, gnl|Hg17|chr5 (87723795-87723918)
               

               
               1-124, gnl|loxAfr1|scaffold_3834 (7067-7757)
               

               
               1-124, gnl|mm7|chr13 (81135051-81134314)
               

               
               1-124, gnl|Mm7|chr13 (81134886-81134764)
               

               
               1-124, gnl|monDom2|scaffold_20 (12226513-12225812)
               

               
               1-124, gnl|oryCun1|scaffold_130676 (12088-12770)
               

               
               1-124, gnl|panTro1|chr4 (27514370-27513682)
               

               
               1-124, gnl|rheMac2|chr6 (84675763-84676453)
               

               
               1-124, gnl|rn3|chr2 (12635460-12634729)
               

               
               1-124, gnl|xenTro1|scaffold_362 (499627-500253)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-124, gnl|bosTau2|chr7 (56951095-56950972)
               

               
               1-124, gnl|canFam2|chr3 (23130705-23130013)
               

               
               1-124, gnl|dasNov1|scaffold_5392 (59573-58879)
               

               
               1-124, gnl|echTel1|scaffold_316902 (38306-37595)
               

               
               1-124, gnl|hg17|chr5 (87723632-87724320)
               

               
               1-124, gnl|Hg17|chr5 (87723795-87723918)
               

               
               1-124, gnl|loxAfr1|scaffold_3834 (7067-7757)
               

               
               1-124, gnl|mm7|chr13 (81135051-81134314)
               

               
               1-124, gnl|Mm7|chr13 (81134886-81134764)
               

               
               1-124, gnl|monDom2|scaffold_20 (12226513-12225812)
               

               
               1-124, gnl|oryCun1|scaffold_130676 (12088-12770)
               

               
               1-124, gnl|panTro1|chr4 (27514370-27513682)
               

               
               1-124, gnl|rheMac2|chr6 (84675763-84676453)
               

               
               1-124, gnl|rn3|chr2 (12635460-12634729)
               

               
               1-124, gnl|xenTro1|scaffold_362 (499627-500253)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fbs (0.175346)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)

	1-124, gnl\|bosTau2\|chr7 (56951095-56950972)
	1-124, gnl\|canFam2\|chr3 (23130705-23130013)
	1-124, gnl\|dasNov1\|scaffold_5392 (59573-58879)
	1-124, gnl\|echTel1\|scaffold_316902 (38306-37595)
	1-124, gnl\|hg17\|chr5 (87723632-87724320)
	1-124, gnl\|Hg17\|chr5 (87723795-87723918)
	1-124, gnl\|loxAfr1\|scaffold_3834 (7067-7757)
	1-124, gnl\|mm7\|chr13 (81135051-81134314)
	1-124, gnl\|Mm7\|chr13 (81134886-81134764)
	1-124, gnl\|monDom2\|scaffold_20 (12226513-12225812)
	1-124, gnl\|oryCun1\|scaffold_130676 (12088-12770)
	1-124, gnl\|panTro1\|chr4 (27514370-27513682)
	1-124, gnl\|rheMac2\|chr6 (84675763-84676453)
	1-124, gnl\|rn3\|chr2 (12635460-12634729)
	1-124, gnl\|xenTro1\|scaffold_362 (499627-500253)