Non-Coding RNA Search

rfbs3919b_l7.y1

Sequence:


               
               AAGTCCAAGCCAAGTTTGGAAATAGAGTCCATTTGAATCCTCAAGGAAATGACCATTTGG
ATTTTTAGAAAAGCCTGGAAGATTAAAATGGAACCATTAGCCCAGTGTATAAAAAAGCTG
GCTTGGTCTTTCAGATATCTGGCTGAGGACAATAAAGATTATAATACAAAGCAAAACTTA
ACTGAGATAGAGGTTTTGAGTTCTGAACTTTGCTAGGCCACTATCACTTGAATTATGCTA
CTGTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTCCAAGCCAAGTTTGGAAATAGAGTCCATTTGAATCCTCAAGGAAATGACCATTTGG
ATTTTTAGAAAAGCCTGGAAGATTAAAATGGAACCATTAGCCCAGTGTATAAAAAAGCTG
GCTTGGTCTTTCAGATATCTGGCTGAGGACAATAAAGATTATAATACAAAGCAAAACTTA
ACTGAGATAGAGGTTTTGAGTTCTGAACTTTGCTAGGCCACTATCACTTGAATTATGCTA
CTGTTGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               47-160, + strand, RNAz p=0.940314

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               47-160, + strand, RNAz p=0.940314

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               5-160, gnl|bosTau2|chr14 (7898980-7899135)
               

               
               5-160, gnl|canFam2|chr13 (24647703-24648132)
               

               
               5-160, gnl|dasNov1|scaffold_212150 (1167-753)
               

               
               5-160, gnl|echTel1|scaffold_320867 (8862-9226)
               

               
               5-160, gnl|hg17|chr8 (124313347-124313781)
               

               
               5-160, gnl|Hg17|chr8 (124313651-124313497)
               

               
               5-160, gnl|loxAfr1|scaffold_24713 (1041-1463)
               

               
               5-160, gnl|monDom2|scaffold_3 (31523727-31523323)
               

               
               5-160, gnl|oryCun1|scaffold_123461 (6056-5639)
               

               
               5-160, gnl|panTro1|chr7 (127034048-127034480)
               

               
               5-160, gnl|rheMac2|chr8 (125813404-125813836)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-160, gnl|bosTau2|chr14 (7898980-7899135)
               

               
               5-160, gnl|canFam2|chr13 (24647703-24648132)
               

               
               5-160, gnl|dasNov1|scaffold_212150 (1167-753)
               

               
               5-160, gnl|echTel1|scaffold_320867 (8862-9226)
               

               
               5-160, gnl|hg17|chr8 (124313347-124313781)
               

               
               5-160, gnl|Hg17|chr8 (124313651-124313497)
               

               
               5-160, gnl|loxAfr1|scaffold_24713 (1041-1463)
               

               
               5-160, gnl|monDom2|scaffold_3 (31523727-31523323)
               

               
               5-160, gnl|oryCun1|scaffold_123461 (6056-5639)
               

               
               5-160, gnl|panTro1|chr7 (127034048-127034480)
               

               
               5-160, gnl|rheMac2|chr8 (125813404-125813836)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fbs (0.175346)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)

	5-160, gnl\|bosTau2\|chr14 (7898980-7899135)
	5-160, gnl\|canFam2\|chr13 (24647703-24648132)
	5-160, gnl\|dasNov1\|scaffold_212150 (1167-753)
	5-160, gnl\|echTel1\|scaffold_320867 (8862-9226)
	5-160, gnl\|hg17\|chr8 (124313347-124313781)
	5-160, gnl\|Hg17\|chr8 (124313651-124313497)
	5-160, gnl\|loxAfr1\|scaffold_24713 (1041-1463)
	5-160, gnl\|monDom2\|scaffold_3 (31523727-31523323)
	5-160, gnl\|oryCun1\|scaffold_123461 (6056-5639)
	5-160, gnl\|panTro1\|chr7 (127034048-127034480)
	5-160, gnl\|rheMac2\|chr8 (125813404-125813836)