Non-Coding RNA Search

rfbs3923b_m14.y1

Sequence:


               
               TCAATCACCTGGAATTCCTGAGGGATGAGGAGCTGGAAGAAAGGCGGGAGAAACGCAGGA
AACAGCTAGCTGAGGAAGAAACAAAGATAACCGACAAAGGCAAAGAAGATAAGGAGAACA
GGGATCAGAGTGCACAGTGCACTGCATCTAAGACAAATGACTCCACTGAACAGAACCTCT
CAGATGGGACTCCCATGCCTGACAGCTACCCAACAACCCCATCTTCAACTGATGCAGCTA
CATCTGAGCCCAAGGAGACCCTTGTAACTCTGCAGCCCTCACAACAGCAACCAACACTCC
CACCCCCACCAGCCTTGGGAGAGATTCCTCAAGAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAATCACCTGGAATTCCTGAGGGATGAGGAGCTGGAAGAAAGGCGGGAGAAACGCAGGA
AACAGCTAGCTGAGGAAGAAACAAAGATAACCGACAAAGGCAAAGAAGATAAGGAGAACA
GGGATCAGAGTGCACAGTGCACTGCATCTAAGACAAATGACTCCACTGAACAGAACCTCT
CAGATGGGACTCCCATGCCTGACAGCTACCCAACAACCCCATCTTCAACTGATGCAGCTA
CATCTGAGCCCAAGGAGACCCTTGTAACTCTGCAGCCCTCACAACAGCAACCAACACTCC
CACCCCCACCAGCCTTGGGAGAGATTCCTCAAGAGCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               190-299, - strand, RNAz p=0.890994

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               190-299, - strand, RNAz p=0.890994

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-137, gnl|bosTau2|chrX (26925755-26925619)
               

               
               1-137, gnl|Hg17|chrX (53468773-53468637)
               

               
               1-137, gnl|Mm7|chrX (146668794-146668935)
               


               
               182-337, gnl|bosTau2|chrX (26922993-26922838)
               

               
               182-337, gnl|canFam2|chrX (45223351-45223592)
               

               
               182-337, gnl|dasNov1|scaffold_2778 (14158-14399)
               

               
               182-337, gnl|hg17|chrX (53464683-53464924)
               

               
               182-337, gnl|Hg17|chrX (53464904-53464749)
               

               
               182-337, gnl|loxAfr1|scaffold_14194 (37206-37447)
               

               
               182-337, gnl|mm7|chrX (146673042-146672801)
               

               
               182-337, gnl|Mm7|chrX (146672819-146672974)
               

               
               182-337, gnl|monDom2|scaffold_255 (33587-33812)
               

               
               182-337, gnl|oryCun1|scaffold_179758 (35820-36061)
               

               
               182-337, gnl|panTro1|chrX (54713638-54713879)
               

               
               182-337, gnl|rheMac2|chrX (51870627-51870868)
               

               
               182-337, gnl|rn3|chrX (41432122-41431881)
               

               
               182-337, gnl|xenTro1|scaffold_750 (538107-538327)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-137, gnl|bosTau2|chrX (26925755-26925619)
               

               
               1-137, gnl|Hg17|chrX (53468773-53468637)
               

               
               1-137, gnl|Mm7|chrX (146668794-146668935)
               


               
               182-337, gnl|bosTau2|chrX (26922993-26922838)
               

               
               182-337, gnl|canFam2|chrX (45223351-45223592)
               

               
               182-337, gnl|dasNov1|scaffold_2778 (14158-14399)
               

               
               182-337, gnl|hg17|chrX (53464683-53464924)
               

               
               182-337, gnl|Hg17|chrX (53464904-53464749)
               

               
               182-337, gnl|loxAfr1|scaffold_14194 (37206-37447)
               

               
               182-337, gnl|mm7|chrX (146673042-146672801)
               

               
               182-337, gnl|Mm7|chrX (146672819-146672974)
               

               
               182-337, gnl|monDom2|scaffold_255 (33587-33812)
               

               
               182-337, gnl|oryCun1|scaffold_179758 (35820-36061)
               

               
               182-337, gnl|panTro1|chrX (54713638-54713879)
               

               
               182-337, gnl|rheMac2|chrX (51870627-51870868)
               

               
               182-337, gnl|rn3|chrX (41432122-41431881)
               

               
               182-337, gnl|xenTro1|scaffold_750 (538107-538327)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fbs (0.175346)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)

	1-137, gnl\|bosTau2\|chrX (26925755-26925619)
	1-137, gnl\|Hg17\|chrX (53468773-53468637)
	1-137, gnl\|Mm7\|chrX (146668794-146668935)

	182-337, gnl\|bosTau2\|chrX (26922993-26922838)
	182-337, gnl\|canFam2\|chrX (45223351-45223592)
	182-337, gnl\|dasNov1\|scaffold_2778 (14158-14399)
	182-337, gnl\|hg17\|chrX (53464683-53464924)
	182-337, gnl\|Hg17\|chrX (53464904-53464749)
	182-337, gnl\|loxAfr1\|scaffold_14194 (37206-37447)
	182-337, gnl\|mm7\|chrX (146673042-146672801)
	182-337, gnl\|Mm7\|chrX (146672819-146672974)
	182-337, gnl\|monDom2\|scaffold_255 (33587-33812)
	182-337, gnl\|oryCun1\|scaffold_179758 (35820-36061)
	182-337, gnl\|panTro1\|chrX (54713638-54713879)
	182-337, gnl\|rheMac2\|chrX (51870627-51870868)
	182-337, gnl\|rn3\|chrX (41432122-41431881)
	182-337, gnl\|xenTro1\|scaffold_750 (538107-538327)