rfbs3924b_b4.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAAAACCCTGCATTCAATTTTAGATGAAGTTGTTTTCAAACTTTTATCAAGCTCCTAGT CCAGTCATAAGAAGTACTGCTACAAAGCTCCTACTGTTGATGGCTGAATCCCATCAGGAA ATTTTGATTTTACTGAGACTAAGTGGCTGCTACAAAGAACTCAGAAGTCTACTAAATAAA CAAGAGCCTGGGACAGAGTTGAGTCAAGAACTTAGACAGCTTATTGGGCTTTTAAGCCCT AAGGGCTATCAGGAAGTAGAAGAGCAGAAACTGCATCAAGCAGCTTGCCTGATTCAAGCT TATTGGAAGGGTTTCCAAACTAGAAAGAGATTAAAGAAGCTTCCATCTGCTGTGATTACT TTGCAGAGGAATTTCAGATCTAAACGAACAAAGATGTTACTGAAGCTAAATAGACAGAAG GAAGAAGAGGACCACAGATTACAACTGCAGCTTCAAAGGCAGAGAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAAAACCCTGCATTCAATTTTAGATGAAGTTGTTTTCAAACTTTTATCAAGCTCCTAGT CCAGTCATAAGAAGTACTGCTACAAAGCTCCTACTGTTGATGGCTGAATCCCATCAGGAA ATTTTGATTTTACTGAGACTAAGTGGCTGCTACAAAGAACTCAGAAGTCTACTAAATAAA CAAGAGCCTGGGACAGAGTTGAGTCAAGAACTTAGACAGCTTATTGGGCTTTTAAGCCCT AAGGGCTATCAGGAAGTAGAAGAGCAGAAACTGCATCAAGCAGCTTGCCTGATTCAAGCT TATTGGAAGGGTTTCCAAACTAGAAAGAGATTAAAGAAGCTTCCATCTGCTGTGATTACT TTGCAGAGGAATTTCAGATCTAAACGAACAAAGATGTTACTGAAGCTAAATAGACAGAAG GAAGAAGAGGACCACAGATTACAACTGCAGCTTCAAAGGCAGAGAGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 265-384, + strand, RNAz p=0.862466 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 265-384, + strand, RNAz p=0.862466 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 1-157, gnl|bosTau2|chr1 (40121194-40121039) | |
| 1-157, gnl|canFam2|chr33 (28123157-28123741) | |
| 1-157, gnl|canFam2|chr33 (28123674-28123496) | |
| 1-157, gnl|echTel1|scaffold_285666 (214738-214294) | |
| 1-157, gnl|echTel1|scaffold_303412 (2506-2328) | |
| 1-157, gnl|hg17|chr3 (123000539-123000980) | |
| 1-157, gnl|Hg17|chr3 (123000888-123000733) | |
| 1-157, gnl|hg17|chr6 (28086894-28087072) | |
| 1-157, gnl|loxAfr1|scaffold_1562 (51256-50822) | |
| 1-157, gnl|loxAfr1|scaffold_1562 (50885-51063) | |
| 1-157, gnl|mm7|chr16 (36556214-36555797) | |
| 1-157, gnl|mm7|chr16 (36555859-36556037) | |
| 1-157, gnl|Mm7|chr16 (36555883-36556038) | |
| 1-157, gnl|monDom2|scaffold_24 (18858996-18858587) | |
| 1-157, gnl|oryCun1|scaffold_214972 (16408-16782) | |
| 1-157, gnl|oryCun1|scaffold_214972 (16723-16545) | |
| 1-157, gnl|panTro1|chr2 (124691743-124692184) | |
| 1-157, gnl|panTro1|chr5 (28577570-28577748) | |
| 1-157, gnl|rheMac2|chr2 (41792118-41792528) | |
| 1-157, gnl|rheMac2|chr2 (41792462-41792284) | |
| 1-157, gnl|rn3|chr11 (65799784-65800198) | |
| 1-157, gnl|rn3|chr11 (65800140-65799962) | |
| 265-384, gnl|bosTau2|chr1 (40117616-40117497) | |
| 265-384, gnl|canFam2|chr33 (28120644-28120810) | |
| 265-384, gnl|danRer3|chr6 (24610207-24610025) | |
| 265-384, gnl|dasNov1|scaffold_36255 (10748-10581) | |
| 265-384, gnl|echTel1|scaffold_281856 (77602-77768) | |
| 265-384, gnl|hg17|chr3 (122996985-122997146) | |
| 265-384, gnl|Hg17|chr3 (122997106-122996987) | |
| 265-384, gnl|loxAfr1|scaffold_1562 (64749-64583) | |
| 265-384, gnl|mm7|chr16 (36559696-36559518) | |
| 265-384, gnl|Mm7|chr16 (36559561-36559680) | |
| 265-384, gnl|monDom2|scaffold_24 (18866182-18866010) | |
| 265-384, gnl|oryCun1|scaffold_212249 (48003-48175) | |
| 265-384, gnl|panTro1|chr2 (124687980-124688141) | |
| 265-384, gnl|rheMac2|chr2 (41788596-41788762) | |
| 265-384, gnl|rn3|chr11 (65796086-65796262) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-157, gnl|bosTau2|chr1 (40121194-40121039) | |
| 1-157, gnl|canFam2|chr33 (28123157-28123741) | |
| 1-157, gnl|canFam2|chr33 (28123674-28123496) | |
| 1-157, gnl|echTel1|scaffold_285666 (214738-214294) | |
| 1-157, gnl|echTel1|scaffold_303412 (2506-2328) | |
| 1-157, gnl|hg17|chr3 (123000539-123000980) | |
| 1-157, gnl|Hg17|chr3 (123000888-123000733) | |
| 1-157, gnl|hg17|chr6 (28086894-28087072) | |
| 1-157, gnl|loxAfr1|scaffold_1562 (51256-50822) | |
| 1-157, gnl|loxAfr1|scaffold_1562 (50885-51063) | |
| 1-157, gnl|mm7|chr16 (36556214-36555797) | |
| 1-157, gnl|mm7|chr16 (36555859-36556037) | |
| 1-157, gnl|Mm7|chr16 (36555883-36556038) | |
| 1-157, gnl|monDom2|scaffold_24 (18858996-18858587) | |
| 1-157, gnl|oryCun1|scaffold_214972 (16408-16782) | |
| 1-157, gnl|oryCun1|scaffold_214972 (16723-16545) | |
| 1-157, gnl|panTro1|chr2 (124691743-124692184) | |
| 1-157, gnl|panTro1|chr5 (28577570-28577748) | |
| 1-157, gnl|rheMac2|chr2 (41792118-41792528) | |
| 1-157, gnl|rheMac2|chr2 (41792462-41792284) | |
| 1-157, gnl|rn3|chr11 (65799784-65800198) | |
| 1-157, gnl|rn3|chr11 (65800140-65799962) | |
| 265-384, gnl|bosTau2|chr1 (40117616-40117497) | |
| 265-384, gnl|canFam2|chr33 (28120644-28120810) | |
| 265-384, gnl|danRer3|chr6 (24610207-24610025) | |
| 265-384, gnl|dasNov1|scaffold_36255 (10748-10581) | |
| 265-384, gnl|echTel1|scaffold_281856 (77602-77768) | |
| 265-384, gnl|hg17|chr3 (122996985-122997146) | |
| 265-384, gnl|Hg17|chr3 (122997106-122996987) | |
| 265-384, gnl|loxAfr1|scaffold_1562 (64749-64583) | |
| 265-384, gnl|mm7|chr16 (36559696-36559518) | |
| 265-384, gnl|Mm7|chr16 (36559561-36559680) | |
| 265-384, gnl|monDom2|scaffold_24 (18866182-18866010) | |
| 265-384, gnl|oryCun1|scaffold_212249 (48003-48175) | |
| 265-384, gnl|panTro1|chr2 (124687980-124688141) | |
| 265-384, gnl|rheMac2|chr2 (41788596-41788762) | |
| 265-384, gnl|rn3|chr11 (65796086-65796262) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fbs (0.175346) |