Non-Coding RNA Search

rfbs3932b_h22.y1

Sequence:


               
               CAGGCTTAATTTAATAAGTACTAATTAAGACTGCCCACAATATTAACATTTTTTGGGACC
ATTTGCATAACTTATCCCATCAGAGCAGCCATTCAGGAGACCAAGACCCAGCTACACGTA
ATGATTTGCTCTTTCTGGAATGTGCCAAGAAAGAAGAATTCAGTATTAAAATATTAAACT
CCAAATTTCAATTTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGCTTAATTTAATAAGTACTAATTAAGACTGCCCACAATATTAACATTTTTTGGGACC
ATTTGCATAACTTATCCCATCAGAGCAGCCATTCAGGAGACCAAGACCCAGCTACACGTA
ATGATTTGCTCTTTCTGGAATGTGCCAAGAAAGAAGAATTCAGTATTAAAATATTAAACT
CCAAATTTCAATTTTTTTTTT

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-199, gnl|bosTau2|chr11 (54854280-54854484)
               

               
               1-199, gnl|canFam2|chr17 (23453847-23454025)
               

               
               1-199, gnl|dasNov1|scaffold_22462 (3845-4012)
               

               
               1-199, gnl|echTel1|scaffold_313162 (55123-54952)
               

               
               1-199, gnl|fr1|chrUn (12380423-12380222)
               

               
               1-199, gnl|hg17|chr2 (26528966-26529161)
               

               
               1-199, gnl|Hg17|chr2 (26528968-26529176)
               

               
               1-199, gnl|loxAfr1|scaffold_1092 (144983-145171)
               

               
               1-199, gnl|mm7|chr5 (29303844-29304006)
               

               
               1-199, gnl|monDom2|scaffold_1 (150288143-150287960)
               

               
               1-199, gnl|oryCun1|scaffold_214661 (59786-59975)
               

               
               1-199, gnl|panTro1|chr12 (27444482-27444677)
               

               
               1-199, gnl|rheMac2|chr13 (26335281-26335476)
               

               
               1-199, gnl|rn3|chr6 (26058550-26058390)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-199, gnl|bosTau2|chr11 (54854280-54854484)
               

               
               1-199, gnl|canFam2|chr17 (23453847-23454025)
               

               
               1-199, gnl|dasNov1|scaffold_22462 (3845-4012)
               

               
               1-199, gnl|echTel1|scaffold_313162 (55123-54952)
               

               
               1-199, gnl|fr1|chrUn (12380423-12380222)
               

               
               1-199, gnl|hg17|chr2 (26528966-26529161)
               

               
               1-199, gnl|Hg17|chr2 (26528968-26529176)
               

               
               1-199, gnl|loxAfr1|scaffold_1092 (144983-145171)
               

               
               1-199, gnl|mm7|chr5 (29303844-29304006)
               

               
               1-199, gnl|monDom2|scaffold_1 (150288143-150287960)
               

               
               1-199, gnl|oryCun1|scaffold_214661 (59786-59975)
               

               
               1-199, gnl|panTro1|chr12 (27444482-27444677)
               

               
               1-199, gnl|rheMac2|chr13 (26335281-26335476)
               

               
               1-199, gnl|rn3|chr6 (26058550-26058390)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fbs (0.175346)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)

	1-199, gnl\|bosTau2\|chr11 (54854280-54854484)
	1-199, gnl\|canFam2\|chr17 (23453847-23454025)
	1-199, gnl\|dasNov1\|scaffold_22462 (3845-4012)
	1-199, gnl\|echTel1\|scaffold_313162 (55123-54952)
	1-199, gnl\|fr1\|chrUn (12380423-12380222)
	1-199, gnl\|hg17\|chr2 (26528966-26529161)
	1-199, gnl\|Hg17\|chr2 (26528968-26529176)
	1-199, gnl\|loxAfr1\|scaffold_1092 (144983-145171)
	1-199, gnl\|mm7\|chr5 (29303844-29304006)
	1-199, gnl\|monDom2\|scaffold_1 (150288143-150287960)
	1-199, gnl\|oryCun1\|scaffold_214661 (59786-59975)
	1-199, gnl\|panTro1\|chr12 (27444482-27444677)
	1-199, gnl\|rheMac2\|chr13 (26335281-26335476)
	1-199, gnl\|rn3\|chr6 (26058550-26058390)