Non-Coding RNA Search

rfbs3933b_a19.y1

Sequence:


               
               TGGAACATGGATGCATTTTAAATTAACTTTCTCTAAGAATCAAAGAATAACCTCTAGAGA
CCCCAGCATGCTCAAAGAGGATTTAAGAAATGACCCCAAGTCCTGTTCTTGACAAGCTGA
CCCAAACATTTAGAAGAAGACAGCAGGAATCAGCCATCAACTTTCTGCCCTGCTGCAAAA
AAGAAGTATGTCAGTTATAATAACCTGGTTATCTAACCTGTTCCATTCCATGGAACCATG
GAGGAGGAATACCCTCAGTTATTTCGTCACCCAACCTGGCATAGGACTCTTTTGGTCCTG
CCTGCTGCCCATCACCGGAGGAGCATCCCCGGCCAGGAGACCAATGGTAGAGGATCCAAG
TGTCCTACACAGCTGCTTTATGAAATATTCTTCCTTTATCTTGGCTTAATAAGTCACTGG
CATCAGCACTGCCAACTCGGCTGCATTTTTGGACCTTCCCTACCAAAGGGAGTGTTAAGA
CTTCAGTCCTATCCAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAACATGGATGCATTTTAAATTAACTTTCTCTAAGAATCAAAGAATAACCTCTAGAGA
CCCCAGCATGCTCAAAGAGGATTTAAGAAATGACCCCAAGTCCTGTTCTTGACAAGCTGA
CCCAAACATTTAGAAGAAGACAGCAGGAATCAGCCATCAACTTTCTGCCCTGCTGCAAAA
AAGAAGTATGTCAGTTATAATAACCTGGTTATCTAACCTGTTCCATTCCATGGAACCATG
GAGGAGGAATACCCTCAGTTATTTCGTCACCCAACCTGGCATAGGACTCTTTTGGTCCTG
CCTGCTGCCCATCACCGGAGGAGCATCCCCGGCCAGGAGACCAATGGTAGAGGATCCAAG
TGTCCTACACAGCTGCTTTATGAAATATTCTTCCTTTATCTTGGCTTAATAAGTCACTGG
CATCAGCACTGCCAACTCGGCTGCATTTTTGGACCTTCCCTACCAAAGGGAGTGTTAAGA
CTTCAGTCCTATCCAGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               206-325, - strand, RNAz p=0.89614

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               206-325, - strand, RNAz p=0.89614

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               44-158, gnl|bosTau2|chr22 (15116323-15116436)
               

               
               44-158, gnl|canFam2|chr20 (13279088-13278795)
               

               
               44-158, gnl|dasNov1|scaffold_151778 (4164-3879)
               

               
               44-158, gnl|echTel1|scaffold_279195 (13048-12725)
               

               
               44-158, gnl|hg17|chr3 (7707738-7708025)
               

               
               44-158, gnl|Hg17|chr3 (7707893-7708006)
               

               
               44-158, gnl|mm7|chr6 (111667968-111668261)
               

               
               44-158, gnl|Mm7|chr6 (111668130-111668245)
               

               
               44-158, gnl|monDom2|scaffold_5 (34119164-34119453)
               

               
               44-158, gnl|oryCun1|scaffold_212124 (108108-107822)
               

               
               44-158, gnl|panTro1|chr2 (8046416-8046703)
               

               
               44-158, gnl|rheMac2|chr2 (53266676-53266391)
               

               
               44-158, gnl|rn3|chr4 (147456922-147457222)
               


               
               167-498, gnl|bosTau2|chr22 (15156748-15157079)
               

               
               167-498, gnl|Hg17|chr3 (7757044-7757374)
               

               
               167-498, gnl|Mm7|chr6 (111725846-111726176)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               44-158, gnl|bosTau2|chr22 (15116323-15116436)
               

               
               44-158, gnl|canFam2|chr20 (13279088-13278795)
               

               
               44-158, gnl|dasNov1|scaffold_151778 (4164-3879)
               

               
               44-158, gnl|echTel1|scaffold_279195 (13048-12725)
               

               
               44-158, gnl|hg17|chr3 (7707738-7708025)
               

               
               44-158, gnl|Hg17|chr3 (7707893-7708006)
               

               
               44-158, gnl|mm7|chr6 (111667968-111668261)
               

               
               44-158, gnl|Mm7|chr6 (111668130-111668245)
               

               
               44-158, gnl|monDom2|scaffold_5 (34119164-34119453)
               

               
               44-158, gnl|oryCun1|scaffold_212124 (108108-107822)
               

               
               44-158, gnl|panTro1|chr2 (8046416-8046703)
               

               
               44-158, gnl|rheMac2|chr2 (53266676-53266391)
               

               
               44-158, gnl|rn3|chr4 (147456922-147457222)
               


               
               167-498, gnl|bosTau2|chr22 (15156748-15157079)
               

               
               167-498, gnl|Hg17|chr3 (7757044-7757374)
               

               
               167-498, gnl|Mm7|chr6 (111725846-111726176)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fbs (0.175346)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)

	44-158, gnl\|bosTau2\|chr22 (15116323-15116436)
	44-158, gnl\|canFam2\|chr20 (13279088-13278795)
	44-158, gnl\|dasNov1\|scaffold_151778 (4164-3879)
	44-158, gnl\|echTel1\|scaffold_279195 (13048-12725)
	44-158, gnl\|hg17\|chr3 (7707738-7708025)
	44-158, gnl\|Hg17\|chr3 (7707893-7708006)
	44-158, gnl\|mm7\|chr6 (111667968-111668261)
	44-158, gnl\|Mm7\|chr6 (111668130-111668245)
	44-158, gnl\|monDom2\|scaffold_5 (34119164-34119453)
	44-158, gnl\|oryCun1\|scaffold_212124 (108108-107822)
	44-158, gnl\|panTro1\|chr2 (8046416-8046703)
	44-158, gnl\|rheMac2\|chr2 (53266676-53266391)
	44-158, gnl\|rn3\|chr4 (147456922-147457222)

	167-498, gnl\|bosTau2\|chr22 (15156748-15157079)
	167-498, gnl\|Hg17\|chr3 (7757044-7757374)
	167-498, gnl\|Mm7\|chr6 (111725846-111726176)