Non-Coding RNA Search

rfbs3936b_k11.y1

Sequence:


               
               TGAATGAATGTGTGTCTCTTAAGCAAAGAGTCCAGAAAGAAGTTGGGTTTAGATAGCATT
GCCTGCCATGTGCCCCTACTCTCTCTAACACACATACACACACACACACACACACACACA
CACACACACGCACCCATGCACGCACGCATGCATGCGCGCTCCCTAGAGGTTATGAGTTGC
CGAAATTTGGCCTAGACCAGGACCAGGGTCCAGGCAAGGGGTGAGGAACTCTGGATGCTA
TTGTATTAGAAATCTCAGACCTTCTCAAAAGACTTTAGCTTCAAGCGAAGCTGGCATGGG
GGCCAGATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAATGAATGTGTGTCTCTTAAGCAAAGAGTCCAGAAAGAAGTTGGGTTTAGATAGCATT
GCCTGCCATGTGCCCCTACTCTCTCTAACACACATACACACACACACACACACACACACA
CACACACACGCACCCATGCACGCACGCATGCATGCGCGCTCCCTAGAGGTTATGAGTTGC
CGAAATTTGGCCTAGACCAGGACCAGGGTCCAGGCAAGGGGTGAGGAACTCTGGATGCTA
TTGTATTAGAAATCTCAGACCTTCTCAAAAGACTTTAGCTTCAAGCGAAGCTGGCATGGG
GGCCAGATCC

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               5-310, gnl|bosTau2|chr7 (26247486-26247180)
               

               
               5-310, gnl|canFam2|chr4 (39916081-39915804)
               

               
               5-310, gnl|dasNov1|scaffold_23993 (4590-4365)
               

               
               5-310, gnl|echTel1|scaffold_306510 (42901-43192)
               

               
               5-310, gnl|hg17|chr5 (175973804-175974083)
               

               
               5-310, gnl|Hg17|chr5 (175974161-175973912)
               

               
               5-310, gnl|loxAfr1|scaffold_35207 (9038-9373)
               

               
               5-310, gnl|mm7|chr13 (53835327-53835631)
               

               
               5-310, gnl|panTro1|chr4 (183428357-183428640)
               

               
               5-310, gnl|rheMac2|chr6 (173101646-173101939)
               

               
               5-310, gnl|rn3|chr17 (15921163-15920858)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-310, gnl|bosTau2|chr7 (26247486-26247180)
               

               
               5-310, gnl|canFam2|chr4 (39916081-39915804)
               

               
               5-310, gnl|dasNov1|scaffold_23993 (4590-4365)
               

               
               5-310, gnl|echTel1|scaffold_306510 (42901-43192)
               

               
               5-310, gnl|hg17|chr5 (175973804-175974083)
               

               
               5-310, gnl|Hg17|chr5 (175974161-175973912)
               

               
               5-310, gnl|loxAfr1|scaffold_35207 (9038-9373)
               

               
               5-310, gnl|mm7|chr13 (53835327-53835631)
               

               
               5-310, gnl|panTro1|chr4 (183428357-183428640)
               

               
               5-310, gnl|rheMac2|chr6 (173101646-173101939)
               

               
               5-310, gnl|rn3|chr17 (15921163-15920858)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fbs (0.175346)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)

	5-310, gnl\|bosTau2\|chr7 (26247486-26247180)
	5-310, gnl\|canFam2\|chr4 (39916081-39915804)
	5-310, gnl\|dasNov1\|scaffold_23993 (4590-4365)
	5-310, gnl\|echTel1\|scaffold_306510 (42901-43192)
	5-310, gnl\|hg17\|chr5 (175973804-175974083)
	5-310, gnl\|Hg17\|chr5 (175974161-175973912)
	5-310, gnl\|loxAfr1\|scaffold_35207 (9038-9373)
	5-310, gnl\|mm7\|chr13 (53835327-53835631)
	5-310, gnl\|panTro1\|chr4 (183428357-183428640)
	5-310, gnl\|rheMac2\|chr6 (173101646-173101939)
	5-310, gnl\|rn3\|chr17 (15921163-15920858)