Non-Coding RNA Search

rfbs3938b_c11.y1

Sequence:


               
               CTCAGTCTTCCCCATTTCCCTTATGATCCCCTCTACTCACCCACCCACAGATAGGTATTT
CTAGCTATAGGAACTTCCCTGGGAGTCAGACTCACATTAGCATCATTTTCTCAGGGACTC
CCTCAGTTCCCAGTGCACTCCTTTCGATGGAATCATTGATTTCTTCTTCACACAACGTGT
CCTTTCCGCCCTTCTTCTACCATGAAGCCCAGTGCGGTCTCTCCCCCATACTCCCAACCT
CTTCAGTCACTCTGTATTCTTTCTCTAAACCTCTTCTCCTTCCATCCTTCTCACCTAGAC
TCACTGGAGTTTCAAGTCATCTTCTCTGACCTGTCCCTCCAAAGATTCTTGGATCCCTTT
CCTTCCCAAAGCTCCTCCTGACATCTTCCAAACTCCAGATCTGCCTCTGACAAGCCTGGG
GTGGAGTAGACCACCCAGAGTCATGAAAGGTTTTAAATCCATATGAGAATTAGGTAAAAG
ATAACCATGGGATGAAACTGGGTGAAGGGTACATGGGACCTCCCTGTGCTTTTTGCATCT
TCCTGTAAATCAAGAATCATTTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAGTCTTCCCCATTTCCCTTATGATCCCCTCTACTCACCCACCCACAGATAGGTATTT
CTAGCTATAGGAACTTCCCTGGGAGTCAGACTCACATTAGCATCATTTTCTCAGGGACTC
CCTCAGTTCCCAGTGCACTCCTTTCGATGGAATCATTGATTTCTTCTTCACACAACGTGT
CCTTTCCGCCCTTCTTCTACCATGAAGCCCAGTGCGGTCTCTCCCCCATACTCCCAACCT
CTTCAGTCACTCTGTATTCTTTCTCTAAACCTCTTCTCCTTCCATCCTTCTCACCTAGAC
TCACTGGAGTTTCAAGTCATCTTCTCTGACCTGTCCCTCCAAAGATTCTTGGATCCCTTT
CCTTCCCAAAGCTCCTCCTGACATCTTCCAAACTCCAGATCTGCCTCTGACAAGCCTGGG
GTGGAGTAGACCACCCAGAGTCATGAAAGGTTTTAAATCCATATGAGAATTAGGTAAAAG
ATAACCATGGGATGAAACTGGGTGAAGGGTACATGGGACCTCCCTGTGCTTTTTGCATCT
TCCTGTAAATCAAGAATCATTTCAA

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               217-565, gnl|bosTau2|chr10 (15563715-15563365)
               

               
               217-565, gnl|canFam2|chr15 (21128983-21129520)
               

               
               217-565, gnl|echTel1|scaffold_322801 (98661-99167)
               

               
               217-565, gnl|hg17|chr14 (20570651-20571184)
               

               
               217-565, gnl|Hg17|chr14 (20571192-20570839)
               

               
               217-565, gnl|mm7|chr14 (47254927-47255351)
               

               
               217-565, gnl|Mm7|chr14 (47255362-47255071)
               

               
               217-565, gnl|panTro1|chrUn_random (21867213-21867746)
               

               
               217-565, gnl|rheMac2|chr7 (83744589-83745127)
               

               
               217-565, gnl|rn3|chr15 (27370501-27370902)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               217-565, gnl|bosTau2|chr10 (15563715-15563365)
               

               
               217-565, gnl|canFam2|chr15 (21128983-21129520)
               

               
               217-565, gnl|echTel1|scaffold_322801 (98661-99167)
               

               
               217-565, gnl|hg17|chr14 (20570651-20571184)
               

               
               217-565, gnl|Hg17|chr14 (20571192-20570839)
               

               
               217-565, gnl|mm7|chr14 (47254927-47255351)
               

               
               217-565, gnl|Mm7|chr14 (47255362-47255071)
               

               
               217-565, gnl|panTro1|chrUn_random (21867213-21867746)
               

               
               217-565, gnl|rheMac2|chr7 (83744589-83745127)
               

               
               217-565, gnl|rn3|chr15 (27370501-27370902)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fbs (0.175346)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)

	217-565, gnl\|bosTau2\|chr10 (15563715-15563365)
	217-565, gnl\|canFam2\|chr15 (21128983-21129520)
	217-565, gnl\|echTel1\|scaffold_322801 (98661-99167)
	217-565, gnl\|hg17\|chr14 (20570651-20571184)
	217-565, gnl\|Hg17\|chr14 (20571192-20570839)
	217-565, gnl\|mm7\|chr14 (47254927-47255351)
	217-565, gnl\|Mm7\|chr14 (47255362-47255071)
	217-565, gnl\|panTro1\|chrUn_random (21867213-21867746)
	217-565, gnl\|rheMac2\|chr7 (83744589-83745127)
	217-565, gnl\|rn3\|chr15 (27370501-27370902)