Non-Coding RNA Search

rfcc03b_h1.y1

Sequence:


               
               ATTACGTTTAACTAGTTAGAAGCTAATGTTTTGTACATTTTTTTTTTTGTATGAGGAAGT
GATGTAGCTTGCCCTGATTTTTTTTTTTTTTTTTGGTCAGCTTTAATATATTTATGCCAG
AATTTTAAATTTTAAAGAAAACTTTCTTGTCCAGGTGTGCATCGAAGAACCACATTTATT
CAATGGTTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTACGTTTAACTAGTTAGAAGCTAATGTTTTGTACATTTTTTTTTTTGTATGAGGAAGT
GATGTAGCTTGCCCTGATTTTTTTTTTTTTTTTTGGTCAGCTTTAATATATTTATGCCAG
AATTTTAAATTTTAAAGAAAACTTTCTTGTCCAGGTGTGCATCGAAGAACCACATTTATT
CAATGGTTGAT

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               1-191, gnl|bosTau2|chr8 (48493531-48493350)
               

               
               1-191, gnl|canFam2|chr11 (61102435-61102674)
               

               
               1-191, gnl|danRer3|chrNA (186385068-186384804)
               

               
               1-191, gnl|echTel1|scaffold_293649 (114396-114617)
               

               
               1-191, gnl|galGal2|chrZ (27558462-27558712)
               

               
               1-191, gnl|hg17|chr9 (101165980-101166218)
               

               
               1-191, gnl|Hg17|chr9 (101165990-101166174)
               

               
               1-191, gnl|loxAfr1|scaffold_28374 (19671-19408)
               

               
               1-191, gnl|mm7|chr4 (49351605-49351832)
               

               
               1-191, gnl|Mm7|chr4 (49351615-49351792)
               

               
               1-191, gnl|monDom2|scaffold_5 (85161265-85161498)
               

               
               1-191, gnl|oryCun1|scaffold_198447 (27359-27132)
               

               
               1-191, gnl|panTro1|chr11 (85406237-85406473)
               

               
               1-191, gnl|rheMac2|chr15 (34901488-34901249)
               

               
               1-191, gnl|rn3|chr5 (66120439-66120681)
               

               
               1-191, gnl|xenTro1|scaffold_28 (2395608-2395857)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-191, gnl|bosTau2|chr8 (48493531-48493350)
               

               
               1-191, gnl|canFam2|chr11 (61102435-61102674)
               

               
               1-191, gnl|danRer3|chrNA (186385068-186384804)
               

               
               1-191, gnl|echTel1|scaffold_293649 (114396-114617)
               

               
               1-191, gnl|galGal2|chrZ (27558462-27558712)
               

               
               1-191, gnl|hg17|chr9 (101165980-101166218)
               

               
               1-191, gnl|Hg17|chr9 (101165990-101166174)
               

               
               1-191, gnl|loxAfr1|scaffold_28374 (19671-19408)
               

               
               1-191, gnl|mm7|chr4 (49351605-49351832)
               

               
               1-191, gnl|Mm7|chr4 (49351615-49351792)
               

               
               1-191, gnl|monDom2|scaffold_5 (85161265-85161498)
               

               
               1-191, gnl|oryCun1|scaffold_198447 (27359-27132)
               

               
               1-191, gnl|panTro1|chr11 (85406237-85406473)
               

               
               1-191, gnl|rheMac2|chr15 (34901488-34901249)
               

               
               1-191, gnl|rn3|chr5 (66120439-66120681)
               

               
               1-191, gnl|xenTro1|scaffold_28 (2395608-2395857)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fcc (0.197785)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)

	1-191, gnl\|bosTau2\|chr8 (48493531-48493350)
	1-191, gnl\|canFam2\|chr11 (61102435-61102674)
	1-191, gnl\|danRer3\|chrNA (186385068-186384804)
	1-191, gnl\|echTel1\|scaffold_293649 (114396-114617)
	1-191, gnl\|galGal2\|chrZ (27558462-27558712)
	1-191, gnl\|hg17\|chr9 (101165980-101166218)
	1-191, gnl\|Hg17\|chr9 (101165990-101166174)
	1-191, gnl\|loxAfr1\|scaffold_28374 (19671-19408)
	1-191, gnl\|mm7\|chr4 (49351605-49351832)
	1-191, gnl\|Mm7\|chr4 (49351615-49351792)
	1-191, gnl\|monDom2\|scaffold_5 (85161265-85161498)
	1-191, gnl\|oryCun1\|scaffold_198447 (27359-27132)
	1-191, gnl\|panTro1\|chr11 (85406237-85406473)
	1-191, gnl\|rheMac2\|chr15 (34901488-34901249)
	1-191, gnl\|rn3\|chr5 (66120439-66120681)
	1-191, gnl\|xenTro1\|scaffold_28 (2395608-2395857)