rfcc05b_h10.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCCTGTCTTCACCGGCTGGCCAAACCAGCTTCTAAACCCTGGTCTCGCTCTGCCCCGAG CGGCTCCTCCAGCGCCACGTTTCTCTTCCCACCCTGTGCTTGCTTTTGCCTCCCCTGCCG CCTTCTACCTCAAGCTTCCTCTGCCTGCTTTTGTCACAGTCCCGTGGGTCGCTGACTTGG AGGCTGCCGCTGGATGGCGTGTGGCCTCTCCCTCTCCGACTCGTTTGCAGCCCGAGGGGC AGCTGGTCCTAGCCCCGGCTGACTTCCACGGTGTATCACCTTCCTGCTCCCTTCTCGGCC CCTCTGCCCCACCTGGACGTGTCGTAGGAGGCCTCGAGGGCGTTCCCAAGAGTCGTCTAG ATGCCAGTGTCTTGGTGTTTGCTGTTTTCATGTTTTAGTTCCCCGCGTAGGGTGGGTTGC CATAGGAAGGGGTGTGTAGCTAGAGTGTGAACTAAGGGCCTCTGTCTGCTTCCTTTTCCT TTCTCTGACAAACTGTGTCACTTTTTTTTTTCCCTCCACACTAACGGATAAGTTGTATTT GCTGTTTGTGGCTACTGAAGTCTTACTGTCCAGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCCTGTCTTCACCGGCTGGCCAAACCAGCTTCTAAACCCTGGTCTCGCTCTGCCCCGAG CGGCTCCTCCAGCGCCACGTTTCTCTTCCCACCCTGTGCTTGCTTTTGCCTCCCCTGCCG CCTTCTACCTCAAGCTTCCTCTGCCTGCTTTTGTCACAGTCCCGTGGGTCGCTGACTTGG AGGCTGCCGCTGGATGGCGTGTGGCCTCTCCCTCTCCGACTCGTTTGCAGCCCGAGGGGC AGCTGGTCCTAGCCCCGGCTGACTTCCACGGTGTATCACCTTCCTGCTCCCTTCTCGGCC CCTCTGCCCCACCTGGACGTGTCGTAGGAGGCCTCGAGGGCGTTCCCAAGAGTCGTCTAG ATGCCAGTGTCTTGGTGTTTGCTGTTTTCATGTTTTAGTTCCCCGCGTAGGGTGGGTTGC CATAGGAAGGGGTGTGTAGCTAGAGTGTGAACTAAGGGCCTCTGTCTGCTTCCTTTTCCT TTCTCTGACAAACTGTGTCACTTTTTTTTTTCCCTCCACACTAACGGATAAGTTGTATTT GCTGTTTGTGGCTACTGAAGTCTTACTGTCCAGCC |
| Predicted RNA structure(s): 5 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
| 12-106, - strand, RNAz p=0.695667 | |
| 120-273, - strand, RNAz p=0.970663 | |
| 302-419, - strand, RNAz p=0.557115 | |
| 419-517, - strand, RNAz p=0.705459 | |
| 422-521, - strand, RNAz p=0.937505 |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 12-106, - strand, RNAz p=0.695667 | |
| 120-273, - strand, RNAz p=0.970663 | |
| 302-419, - strand, RNAz p=0.557115 | |
| 419-517, - strand, RNAz p=0.705459 | |
| 422-521, - strand, RNAz p=0.937505 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 1-569, gnl|bosTau2|chr3 (68337071-68336516) | |
| 1-569, gnl|canFam2|chr15 (18318230-18317574) | |
| 1-569, gnl|canFam2|chr15 (18318403-18317770) | |
| 1-569, gnl|canFam2|chr15 (18317770-18318403) | |
| 1-569, gnl|canFam2|chr15 (18318407-18317544) | |
| 1-569, gnl|dasNov1|scaffold_51052 (7612-6948) | |
| 1-569, gnl|dasNov1|scaffold_51052 (7779-7134) | |
| 1-569, gnl|dasNov1|scaffold_51052 (7134-7779) | |
| 1-569, gnl|dasNov1|scaffold_51052 (7778-6918) | |
| 1-569, gnl|Hg17|chr1 (45151891-45151330) | |
| 1-569, gnl|hg17|chr17 (20425767-20426455) | |
| 1-569, gnl|hg17|chr17 (13870449-13871091) | |
| 1-569, gnl|hg17|chr17 (14078342-14078984) | |
| 1-569, gnl|hg17|chr17 (15610677-15611593) | |
| 1-569, gnl|loxAfr1|scaffold_30766 (6975-7667) | |
| 1-569, gnl|loxAfr1|scaffold_30766 (6801-7449) | |
| 1-569, gnl|loxAfr1|scaffold_30766 (7449-6801) | |
| 1-569, gnl|loxAfr1|scaffold_30766 (6798-7697) | |
| 1-569, gnl|mm7|chr4 (116365546-116364864) | |
| 1-569, gnl|mm7|chr4 (116365708-116365073) | |
| 1-569, gnl|mm7|chr4 (116365073-116365708) | |
| 1-569, gnl|mm7|chr4 (116365712-116364836) | |
| 1-569, gnl|Mm7|chr4 (116364976-116365542) | |
| 1-569, gnl|oryCun1|scaffold_148919 (5166-5839) | |
| 1-569, gnl|oryCun1|scaffold_148919 (5011-5893) | |
| 1-569, gnl|oryCun1|scaffold_203738 (56304-55713) | |
| 1-569, gnl|oryCun1|scaffold_203738 (55712-56304) | |
| 1-569, gnl|panTro1|chr19 (20773220-20773909) | |
| 1-569, gnl|panTro1|chr19 (20773033-20773947) | |
| 1-569, gnl|panTro1|chr19_random (24456846-24456204) | |
| 1-569, gnl|panTro1|chr19_random (24234269-24233627) | |
| 1-569, gnl|rheMac2|chr16 (16703001-16703686) | |
| 1-569, gnl|rheMac2|chr16 (16702809-16703474) | |
| 1-569, gnl|rheMac2|chr16 (16703474-16702809) | |
| 1-569, gnl|rheMac2|chr16 (16702807-16703724) | |
| 1-569, gnl|rn3|chr5 (137300572-137299897) | |
| 1-569, gnl|rn3|chr5 (137300733-137300109) | |
| 1-569, gnl|rn3|chr5 (137300109-137300733) | |
| 1-569, gnl|rn3|chr5 (137300737-137299869) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-569, gnl|bosTau2|chr3 (68337071-68336516) | |
| 1-569, gnl|canFam2|chr15 (18318230-18317574) | |
| 1-569, gnl|canFam2|chr15 (18318403-18317770) | |
| 1-569, gnl|canFam2|chr15 (18317770-18318403) | |
| 1-569, gnl|canFam2|chr15 (18318407-18317544) | |
| 1-569, gnl|dasNov1|scaffold_51052 (7612-6948) | |
| 1-569, gnl|dasNov1|scaffold_51052 (7779-7134) | |
| 1-569, gnl|dasNov1|scaffold_51052 (7134-7779) | |
| 1-569, gnl|dasNov1|scaffold_51052 (7778-6918) | |
| 1-569, gnl|Hg17|chr1 (45151891-45151330) | |
| 1-569, gnl|hg17|chr17 (20425767-20426455) | |
| 1-569, gnl|hg17|chr17 (13870449-13871091) | |
| 1-569, gnl|hg17|chr17 (14078342-14078984) | |
| 1-569, gnl|hg17|chr17 (15610677-15611593) | |
| 1-569, gnl|loxAfr1|scaffold_30766 (6975-7667) | |
| 1-569, gnl|loxAfr1|scaffold_30766 (6801-7449) | |
| 1-569, gnl|loxAfr1|scaffold_30766 (7449-6801) | |
| 1-569, gnl|loxAfr1|scaffold_30766 (6798-7697) | |
| 1-569, gnl|mm7|chr4 (116365546-116364864) | |
| 1-569, gnl|mm7|chr4 (116365708-116365073) | |
| 1-569, gnl|mm7|chr4 (116365073-116365708) | |
| 1-569, gnl|mm7|chr4 (116365712-116364836) | |
| 1-569, gnl|Mm7|chr4 (116364976-116365542) | |
| 1-569, gnl|oryCun1|scaffold_148919 (5166-5839) | |
| 1-569, gnl|oryCun1|scaffold_148919 (5011-5893) | |
| 1-569, gnl|oryCun1|scaffold_203738 (56304-55713) | |
| 1-569, gnl|oryCun1|scaffold_203738 (55712-56304) | |
| 1-569, gnl|panTro1|chr19 (20773220-20773909) | |
| 1-569, gnl|panTro1|chr19 (20773033-20773947) | |
| 1-569, gnl|panTro1|chr19_random (24456846-24456204) | |
| 1-569, gnl|panTro1|chr19_random (24234269-24233627) | |
| 1-569, gnl|rheMac2|chr16 (16703001-16703686) | |
| 1-569, gnl|rheMac2|chr16 (16702809-16703474) | |
| 1-569, gnl|rheMac2|chr16 (16703474-16702809) | |
| 1-569, gnl|rheMac2|chr16 (16702807-16703724) | |
| 1-569, gnl|rn3|chr5 (137300572-137299897) | |
| 1-569, gnl|rn3|chr5 (137300733-137300109) | |
| 1-569, gnl|rn3|chr5 (137300109-137300733) | |
| 1-569, gnl|rn3|chr5 (137300737-137299869) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.197785) |