Non-Coding RNA Search

rfcc07b_b10.y1

Sequence:


               
               GAGACATTAGAGATCTAATATAGCTTAATTTTATTAAGGTTTTGGATTCTGTCCTACACA
CAACCTGGCACTGGAAAATTCGACCTAGATCACTACCCACTCTATTAAAATTGTATTCCA
CTGTTTGCTAGGAATGGTTGATCATGTATCTGGGTAAGACTTCCTTCATTTCTATTTTTT
GCATTCCTCCTCCTTAACCTTTGAGAAATAAGCATAGTAATCAAAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGACATTAGAGATCTAATATAGCTTAATTTTATTAAGGTTTTGGATTCTGTCCTACACA
CAACCTGGCACTGGAAAATTCGACCTAGATCACTACCCACTCTATTAAAATTGTATTCCA
CTGTTTGCTAGGAATGGTTGATCATGTATCTGGGTAAGACTTCCTTCATTTCTATTTTTT
GCATTCCTCCTCCTTAACCTTTGAGAAATAAGCATAGTAATCAAAGTT

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               9-228, gnl|bosTau2|chr6 (1146574-1146794)
               

               
               9-228, gnl|canFam2|chr19 (22062357-22062193)
               

               
               9-228, gnl|dasNov1|scaffold_7698 (24674-24511)
               

               
               9-228, gnl|echTel1|scaffold_316900 (43620-43798)
               

               
               9-228, gnl|hg17|chr4 (122310933-122311093)
               

               
               9-228, gnl|Hg17|chr4 (122311177-122310956)
               

               
               9-228, gnl|mm7|chr6 (65696689-65696561)
               

               
               9-228, gnl|Mm7|chr6 (65696476-65696677)
               

               
               9-228, gnl|oryCun1|scaffold_213646 (65578-65434)
               

               
               9-228, gnl|panTro1|chr3 (139139606-139139767)
               

               
               9-228, gnl|rheMac2|chr5 (113406122-113406283)
               

               
               9-228, gnl|rn3|chr4 (95597727-95597638)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-228, gnl|bosTau2|chr6 (1146574-1146794)
               

               
               9-228, gnl|canFam2|chr19 (22062357-22062193)
               

               
               9-228, gnl|dasNov1|scaffold_7698 (24674-24511)
               

               
               9-228, gnl|echTel1|scaffold_316900 (43620-43798)
               

               
               9-228, gnl|hg17|chr4 (122310933-122311093)
               

               
               9-228, gnl|Hg17|chr4 (122311177-122310956)
               

               
               9-228, gnl|mm7|chr6 (65696689-65696561)
               

               
               9-228, gnl|Mm7|chr6 (65696476-65696677)
               

               
               9-228, gnl|oryCun1|scaffold_213646 (65578-65434)
               

               
               9-228, gnl|panTro1|chr3 (139139606-139139767)
               

               
               9-228, gnl|rheMac2|chr5 (113406122-113406283)
               

               
               9-228, gnl|rn3|chr4 (95597727-95597638)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fcc (0.197785)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)

	9-228, gnl\|bosTau2\|chr6 (1146574-1146794)
	9-228, gnl\|canFam2\|chr19 (22062357-22062193)
	9-228, gnl\|dasNov1\|scaffold_7698 (24674-24511)
	9-228, gnl\|echTel1\|scaffold_316900 (43620-43798)
	9-228, gnl\|hg17\|chr4 (122310933-122311093)
	9-228, gnl\|Hg17\|chr4 (122311177-122310956)
	9-228, gnl\|mm7\|chr6 (65696689-65696561)
	9-228, gnl\|Mm7\|chr6 (65696476-65696677)
	9-228, gnl\|oryCun1\|scaffold_213646 (65578-65434)
	9-228, gnl\|panTro1\|chr3 (139139606-139139767)
	9-228, gnl\|rheMac2\|chr5 (113406122-113406283)
	9-228, gnl\|rn3\|chr4 (95597727-95597638)