rfcc07b_m16.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAAGACCTGGCAGAGAACTGGGGCATCAAAGCTGTGACCGTCTATGACAAGCCGGCATC TTTCTTTAAAGAGACGCCCTTGGACCTGCAACACCAGCTCTTTATGAAGCTGAGCCGCAT CTACTCTGTGTTCAGGGCCCGGTACGTCGGCTCTCCTCAGCCTTCAGCTGCCTTCTGTAT GGTCGCTGTGACCTGGTCCCTCCCCTGTCTCCTTGCCGCAGACCCGGGGATCCGCGAACC CAAGGCCTGACAAACTGTGGCTGCAGGCCCGCTGCTTGTTTTTGTAAATGACGTTTTATT AGAGCACAGCACATGTAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAAGACCTGGCAGAGAACTGGGGCATCAAAGCTGTGACCGTCTATGACAAGCCGGCATC TTTCTTTAAAGAGACGCCCTTGGACCTGCAACACCAGCTCTTTATGAAGCTGAGCCGCAT CTACTCTGTGTTCAGGGCCCGGTACGTCGGCTCTCCTCAGCCTTCAGCTGCCTTCTGTAT GGTCGCTGTGACCTGGTCCCTCCCCTGTCTCCTTGCCGCAGACCCGGGGATCCGCGAACC CAAGGCCTGACAAACTGTGGCTGCAGGCCCGCTGCTTGTTTTTGTAAATGACGTTTTATT AGAGCACAGCACATGTAAAAAAAAAAAAAAAAAA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 28-196, - strand, RNAz p=0.96662 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 28-196, - strand, RNAz p=0.96662 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 28-196, gnl|bosTau2|chr25 (4916035-4916209) | |
| 28-196, gnl|canFam2|chr6 (39417797-39417668) | |
| 28-196, gnl|canFam2|chr6 (39417790-39417647) | |
| 28-196, gnl|canFam2|chr6 (39417790-39417681) | |
| 28-196, gnl|danRer3|chr22 (6153838-6153726) | |
| 28-196, gnl|danRer3|chr22 (6153838-6153708) | |
| 28-196, gnl|danRer3|chr3 (23006783-23006892) | |
| 28-196, gnl|echTel1|scaffold_203091 (9052-8931) | |
| 28-196, gnl|echTel1|scaffold_203091 (9053-8893) | |
| 28-196, gnl|echTel1|scaffold_203091 (9053-8944) | |
| 28-196, gnl|fr1|chrUn (146985511-146985391) | |
| 28-196, gnl|fr1|chrUn (146985511-146985355) | |
| 28-196, gnl|fr1|chrUn (146985511-146985403) | |
| 28-196, gnl|galGal2|chr14 (1725814-1725685) | |
| 28-196, gnl|hg17|chr11 (3379559-3379666) | |
| 28-196, gnl|hg17|chr16 (5067896-5068025) | |
| 28-196, gnl|Hg17|chr16 (5067906-5068096) | |
| 28-196, gnl|hg17|chr7 (6736680-6736840) | |
| 28-196, gnl|loxAfr1|scaffold_26486 (5712-5583) | |
| 28-196, gnl|loxAfr1|scaffold_26486 (5705-5532) | |
| 28-196, gnl|loxAfr1|scaffold_26486 (5705-5596) | |
| 28-196, gnl|mm7|chr16 (4912285-4912412) | |
| 28-196, gnl|mm7|chr16 (4912292-4912432) | |
| 28-196, gnl|mm7|chr16 (4912292-4912401) | |
| 28-196, gnl|Mm7|chr16 (4912295-4912457) | |
| 28-196, gnl|monDom2|scaffold_17 (42252711-42252602) | |
| 28-196, gnl|oryCun1|scaffold_195750 (7741-7612) | |
| 28-196, gnl|oryCun1|scaffold_195750 (7734-7574) | |
| 28-196, gnl|oryCun1|scaffold_195750 (7734-7625) | |
| 28-196, gnl|panTro1|chr18 (5021896-5022025) | |
| 28-196, gnl|panTro1|chr6 (7198788-7198948) | |
| 28-196, gnl|panTro1|chr9 (3520702-3520810) | |
| 28-196, gnl|rheMac2|chr20 (5252417-5252546) | |
| 28-196, gnl|rheMac2|chr20 (5252424-5252584) | |
| 28-196, gnl|rheMac2|chr20 (5252424-5252533) | |
| 28-196, gnl|rn3|chr10 (10465761-10465634) | |
| 28-196, gnl|rn3|chr10 (10465754-10465618) | |
| 28-196, gnl|rn3|chr10 (10465754-10465645) | |
| 28-196, gnl|tetNig1|chr3 (14067395-14067287) | |
| 28-196, gnl|tetNig1|chr3 (14067395-14067287) | |
| 28-196, gnl|tetNig1|chr3 (14067395-14067287) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 28-196, gnl|bosTau2|chr25 (4916035-4916209) | |
| 28-196, gnl|canFam2|chr6 (39417797-39417668) | |
| 28-196, gnl|canFam2|chr6 (39417790-39417647) | |
| 28-196, gnl|canFam2|chr6 (39417790-39417681) | |
| 28-196, gnl|danRer3|chr22 (6153838-6153726) | |
| 28-196, gnl|danRer3|chr22 (6153838-6153708) | |
| 28-196, gnl|danRer3|chr3 (23006783-23006892) | |
| 28-196, gnl|echTel1|scaffold_203091 (9052-8931) | |
| 28-196, gnl|echTel1|scaffold_203091 (9053-8893) | |
| 28-196, gnl|echTel1|scaffold_203091 (9053-8944) | |
| 28-196, gnl|fr1|chrUn (146985511-146985391) | |
| 28-196, gnl|fr1|chrUn (146985511-146985355) | |
| 28-196, gnl|fr1|chrUn (146985511-146985403) | |
| 28-196, gnl|galGal2|chr14 (1725814-1725685) | |
| 28-196, gnl|hg17|chr11 (3379559-3379666) | |
| 28-196, gnl|hg17|chr16 (5067896-5068025) | |
| 28-196, gnl|Hg17|chr16 (5067906-5068096) | |
| 28-196, gnl|hg17|chr7 (6736680-6736840) | |
| 28-196, gnl|loxAfr1|scaffold_26486 (5712-5583) | |
| 28-196, gnl|loxAfr1|scaffold_26486 (5705-5532) | |
| 28-196, gnl|loxAfr1|scaffold_26486 (5705-5596) | |
| 28-196, gnl|mm7|chr16 (4912285-4912412) | |
| 28-196, gnl|mm7|chr16 (4912292-4912432) | |
| 28-196, gnl|mm7|chr16 (4912292-4912401) | |
| 28-196, gnl|Mm7|chr16 (4912295-4912457) | |
| 28-196, gnl|monDom2|scaffold_17 (42252711-42252602) | |
| 28-196, gnl|oryCun1|scaffold_195750 (7741-7612) | |
| 28-196, gnl|oryCun1|scaffold_195750 (7734-7574) | |
| 28-196, gnl|oryCun1|scaffold_195750 (7734-7625) | |
| 28-196, gnl|panTro1|chr18 (5021896-5022025) | |
| 28-196, gnl|panTro1|chr6 (7198788-7198948) | |
| 28-196, gnl|panTro1|chr9 (3520702-3520810) | |
| 28-196, gnl|rheMac2|chr20 (5252417-5252546) | |
| 28-196, gnl|rheMac2|chr20 (5252424-5252584) | |
| 28-196, gnl|rheMac2|chr20 (5252424-5252533) | |
| 28-196, gnl|rn3|chr10 (10465761-10465634) | |
| 28-196, gnl|rn3|chr10 (10465754-10465618) | |
| 28-196, gnl|rn3|chr10 (10465754-10465645) | |
| 28-196, gnl|tetNig1|chr3 (14067395-14067287) | |
| 28-196, gnl|tetNig1|chr3 (14067395-14067287) | |
| 28-196, gnl|tetNig1|chr3 (14067395-14067287) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.197785) |