Non-Coding RNA Search

rfcc13b_b18.y1

Sequence:


               
               GAATTTTTGAAAATGGGAAGTTGGAAATGAAATAGGTTGCTGTGTGCATTAATCATCTTC
ACACTGGATTTAGTCACCTACATGACTAAATTCTTTGTAGGTCTGGAATGGCAGGGCAGA
AGACTTTAATGCGCTATTACTGAGTACTGTAAAATAAATGCTTTTTGGATTCTCAAAAAA
AAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATTTTTGAAAATGGGAAGTTGGAAATGAAATAGGTTGCTGTGTGCATTAATCATCTTC
ACACTGGATTTAGTCACCTACATGACTAAATTCTTTGTAGGTCTGGAATGGCAGGGCAGA
AGACTTTAATGCGCTATTACTGAGTACTGTAAAATAAATGCTTTTTGGATTCTCAAAAAA
AAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               65-181, - strand, RNAz p=0.711641

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               65-181, - strand, RNAz p=0.711641

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-181, gnl|bosTau2|chr1 (72318616-72318796)
               

               
               1-181, gnl|canFam2|chr23 (50559878-50560051)
               

               
               1-181, gnl|dasNov1|scaffold_5428 (68501-68675)
               

               
               1-181, gnl|echTel1|scaffold_288554 (50057-49887)
               

               
               1-181, gnl|hg17|chr3 (154366485-154366649)
               

               
               1-181, gnl|Hg17|chr3 (154366505-154366680)
               

               
               1-181, gnl|loxAfr1|scaffold_9662 (29579-29410)
               

               
               1-181, gnl|mm7|chr3 (61524793-61524918)
               

               
               1-181, gnl|Mm7|chr3 (61524799-61524949)
               

               
               1-181, gnl|monDom2|scaffold_69 (5657968-5657798)
               

               
               1-181, gnl|oryCun1|scaffold_213814 (5858-6041)
               

               
               1-181, gnl|panTro1|chr2 (157478531-157478696)
               

               
               1-181, gnl|rheMac2|chr2 (134482634-134482471)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-181, gnl|bosTau2|chr1 (72318616-72318796)
               

               
               1-181, gnl|canFam2|chr23 (50559878-50560051)
               

               
               1-181, gnl|dasNov1|scaffold_5428 (68501-68675)
               

               
               1-181, gnl|echTel1|scaffold_288554 (50057-49887)
               

               
               1-181, gnl|hg17|chr3 (154366485-154366649)
               

               
               1-181, gnl|Hg17|chr3 (154366505-154366680)
               

               
               1-181, gnl|loxAfr1|scaffold_9662 (29579-29410)
               

               
               1-181, gnl|mm7|chr3 (61524793-61524918)
               

               
               1-181, gnl|Mm7|chr3 (61524799-61524949)
               

               
               1-181, gnl|monDom2|scaffold_69 (5657968-5657798)
               

               
               1-181, gnl|oryCun1|scaffold_213814 (5858-6041)
               

               
               1-181, gnl|panTro1|chr2 (157478531-157478696)
               

               
               1-181, gnl|rheMac2|chr2 (134482634-134482471)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fcc (0.197785)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)

	1-181, gnl\|bosTau2\|chr1 (72318616-72318796)
	1-181, gnl\|canFam2\|chr23 (50559878-50560051)
	1-181, gnl\|dasNov1\|scaffold_5428 (68501-68675)
	1-181, gnl\|echTel1\|scaffold_288554 (50057-49887)
	1-181, gnl\|hg17\|chr3 (154366485-154366649)
	1-181, gnl\|Hg17\|chr3 (154366505-154366680)
	1-181, gnl\|loxAfr1\|scaffold_9662 (29579-29410)
	1-181, gnl\|mm7\|chr3 (61524793-61524918)
	1-181, gnl\|Mm7\|chr3 (61524799-61524949)
	1-181, gnl\|monDom2\|scaffold_69 (5657968-5657798)
	1-181, gnl\|oryCun1\|scaffold_213814 (5858-6041)
	1-181, gnl\|panTro1\|chr2 (157478531-157478696)
	1-181, gnl\|rheMac2\|chr2 (134482634-134482471)