rfcc13b_p12.y1
|
CAAAATAAGAGTTTTTATACAGATGCCATGCATGATGTTTTATTCCTTTGTAGACTTATT
TCTGAATCGGTACCATTCTGCTATTGACTGTAGATGAAAACTCTGGCTGGGAAAACAAAA
TCCTGATTGTCTAACATAAAGGTAACATACAAGACAGAAGGTTAAATAACATAAGAGAGC
CTGACTGAACCTCCTTTGCTAGGAGGTATGTTATTTTAAGCTGCAGTGCATGTGCATGTA
TAAGTAATATATATAATATTCTCAGATATTATATACTTATTACATACACGCACGGCGCTT
TCCAAGACAGCTACAAATTTACACATGCATCAACTATCTAAAAACAT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CAAAATAAGAGTTTTTATACAGATGCCATGCATGATGTTTTATTCCTTTGTAGACTTATT
TCTGAATCGGTACCATTCTGCTATTGACTGTAGATGAAAACTCTGGCTGGGAAAACAAAA
TCCTGATTGTCTAACATAAAGGTAACATACAAGACAGAAGGTTAAATAACATAAGAGAGC
CTGACTGAACCTCCTTTGCTAGGAGGTATGTTATTTTAAGCTGCAGTGCATGTGCATGTA
TAAGTAATATATATAATATTCTCAGATATTATATACTTATTACATACACGCACGGCGCTT
TCCAAGACAGCTACAAATTTACACATGCATCAACTATCTAAAAACAT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
218-340, - strand, RNAmicro p=0.999984 |
|
226-304, + strand, RNAmicro p=0.999954 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
218-340, - strand, RNAmicro p=0.999984 |
|
226-304, + strand, RNAmicro p=0.999954 |
|
212-347, AJ677047 KN224 Bos taurus cDNA clone KN224-022_L15, mRNA sequence
(emb|AJ677047.1|), blast E-value=1e-35, identity=89.29% |
|
215-347, DKFZp761I22121_r1 761 (synonym (emb|AL118995.1|), blast
E-value=4.99997e-41, identity=91.24% |
|
215-347, UI-E-DX1-agw-o-24-0-UI.r1 UI-E-DX1 Homo sapiens cDNA clone
(gb|BM698896.1|), blast E-value=4.99997e-41, identity=91.24% |
|
215-347, cs86c10.y2 Human Retinal pigment epithelium/choroid cDNA
(gb|CA397109.1|), blast E-value=4.99997e-41, identity=91.24% |
|
212-347, 592774 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB419878.1|),
blast E-value=1e-35, identity=89.29% |
|
212-347, 1371728 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN535688.1|),
blast E-value=1e-35, identity=89.29% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
212-347, AJ677047 KN224 Bos taurus cDNA clone KN224-022_L15, mRNA sequence
(emb|AJ677047.1|), blast E-value=1e-35, identity=89.29% |
|
215-347, DKFZp761I22121_r1 761 (synonym (emb|AL118995.1|), blast
E-value=4.99997e-41, identity=91.24% |
|
215-347, UI-E-DX1-agw-o-24-0-UI.r1 UI-E-DX1 Homo sapiens cDNA clone
(gb|BM698896.1|), blast E-value=4.99997e-41, identity=91.24% |
|
215-347, cs86c10.y2 Human Retinal pigment epithelium/choroid cDNA
(gb|CA397109.1|), blast E-value=4.99997e-41, identity=91.24% |
|
212-347, 592774 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB419878.1|),
blast E-value=1e-35, identity=89.29% |
|
212-347, 1371728 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN535688.1|),
blast E-value=1e-35, identity=89.29% |
Human gene identifier and UTR site,
human gene reading direction
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
