Non-Coding RNA Search

rfcc20b_c18.y1

Sequence:


               
               GTTAAAGTCAACATCCAGTGTCTTGTTTTGATTTTCAGATGCTCTGTAGTTGTGACATTT
TGTTTGGGGGGTTTCTGTAGTCTTGTTTGGATCACTCTTTTAAAGAGACTGGTATAGAAC
AAGCCCTTGAAAAAGCCACACTTGCCCTTTCCCGAGAAGTGCTGTTTTAGAACATGTTGG
ATATTGTCTGTTGTCTTCATGCGAACATGACATTGATTCACTCTGAAAAAAAAAAAAAAA
AAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTAAAGTCAACATCCAGTGTCTTGTTTTGATTTTCAGATGCTCTGTAGTTGTGACATTT
TGTTTGGGGGGTTTCTGTAGTCTTGTTTGGATCACTCTTTTAAAGAGACTGGTATAGAAC
AAGCCCTTGAAAAAGCCACACTTGCCCTTTCCCGAGAAGTGCTGTTTTAGAACATGTTGG
ATATTGTCTGTTGTCTTCATGCGAACATGACATTGATTCACTCTGAAAAAAAAAAAAAAA
AAAAA

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

Help | Less info


               
               1-221, gnl|bosTau2|chr26 (8557247-8557471)
               

               
               1-221, gnl|canFam2|chr28 (13346156-13346504)
               

               
               1-221, gnl|danRer3|chr11 (11949165-11948863)
               

               
               1-221, gnl|dasNov1|scaffold_1835 (8547-8189)
               

               
               1-221, gnl|echTel1|scaffold_243301 (449-793)
               

               
               1-221, gnl|fr1|chrUn (117980361-117980080)
               

               
               1-221, gnl|galGal2|chr6 (21536998-21536646)
               

               
               1-221, gnl|hg17|chr10 (98747736-98748074)
               

               
               1-221, gnl|Hg17|chr10 (98748004-98747790)
               

               
               1-221, gnl|loxAfr1|scaffold_8190 (25355-25002)
               

               
               1-221, gnl|mm7|chr19 (41491613-41491948)
               

               
               1-221, gnl|Mm7|chr19 (41491878-41491666)
               

               
               1-221, gnl|monDom2|scaffold_14 (25574947-25574657)
               

               
               1-221, gnl|panTro1|chr8 (100438134-100438469)
               

               
               1-221, gnl|rheMac2|chr9 (96577137-96577499)
               

               
               1-221, gnl|rn3|chr1 (246925899-246926234)
               

               
               1-221, gnl|tetNig1|chr17 (5113287-5112943)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-221, gnl|bosTau2|chr26 (8557247-8557471)
               

               
               1-221, gnl|canFam2|chr28 (13346156-13346504)
               

               
               1-221, gnl|danRer3|chr11 (11949165-11948863)
               

               
               1-221, gnl|dasNov1|scaffold_1835 (8547-8189)
               

               
               1-221, gnl|echTel1|scaffold_243301 (449-793)
               

               
               1-221, gnl|fr1|chrUn (117980361-117980080)
               

               
               1-221, gnl|galGal2|chr6 (21536998-21536646)
               

               
               1-221, gnl|hg17|chr10 (98747736-98748074)
               

               
               1-221, gnl|Hg17|chr10 (98748004-98747790)
               

               
               1-221, gnl|loxAfr1|scaffold_8190 (25355-25002)
               

               
               1-221, gnl|mm7|chr19 (41491613-41491948)
               

               
               1-221, gnl|Mm7|chr19 (41491878-41491666)
               

               
               1-221, gnl|monDom2|scaffold_14 (25574947-25574657)
               

               
               1-221, gnl|panTro1|chr8 (100438134-100438469)
               

               
               1-221, gnl|rheMac2|chr9 (96577137-96577499)
               

               
               1-221, gnl|rn3|chr1 (246925899-246926234)
               

               
               1-221, gnl|tetNig1|chr17 (5113287-5112943)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fcc (0.197785)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)

	1-221, gnl\|bosTau2\|chr26 (8557247-8557471)
	1-221, gnl\|canFam2\|chr28 (13346156-13346504)
	1-221, gnl\|danRer3\|chr11 (11949165-11948863)
	1-221, gnl\|dasNov1\|scaffold_1835 (8547-8189)
	1-221, gnl\|echTel1\|scaffold_243301 (449-793)
	1-221, gnl\|fr1\|chrUn (117980361-117980080)
	1-221, gnl\|galGal2\|chr6 (21536998-21536646)
	1-221, gnl\|hg17\|chr10 (98747736-98748074)
	1-221, gnl\|Hg17\|chr10 (98748004-98747790)
	1-221, gnl\|loxAfr1\|scaffold_8190 (25355-25002)
	1-221, gnl\|mm7\|chr19 (41491613-41491948)
	1-221, gnl\|Mm7\|chr19 (41491878-41491666)
	1-221, gnl\|monDom2\|scaffold_14 (25574947-25574657)
	1-221, gnl\|panTro1\|chr8 (100438134-100438469)
	1-221, gnl\|rheMac2\|chr9 (96577137-96577499)
	1-221, gnl\|rn3\|chr1 (246925899-246926234)
	1-221, gnl\|tetNig1\|chr17 (5113287-5112943)