Non-Coding RNA Search

rfcc29b_e16.y1

Sequence:


               
               CTTAAAGTAAGCAGCATTGGGACAGGTCACAGCTCTGTGAGTGACCTCAGGTGCTGTGGA
CAGCCCCAGATTTCAAGAATTGGATCTGCTTTCTTGGGAGTCATCACTGAACTAACGTCC
CACATGGTGTTACTTACTGTAGATGCTCTCTCATGGAGGAGGCCCAGAGCACACATCCTG
ATCGCTTGTGGTACTCAGAGAGGGGGTGCTAACTCTGATGCCCTGGCCAAATTCCAGTTT
AGGGATGTGGGTCTTCTTGCCATTCTAATTGGAAATGTGCATCGCTTTCCATTTTCCCTG
TTGATCTTGGTGCAAACTGCACAAGTCTATTTCTTTGCCCTGATCCCAAGTCTCTAAGAT
GCTGGTATGTATTATATGGGCCAAATTCATGCCTTCTCCTAATGCAGGAAAGTTGAGGAA
TGAGGGAGCTCAGTGTCAAAGTGCCCTGTGGTTGGAGGGGAAACTCTTAGGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTAAAGTAAGCAGCATTGGGACAGGTCACAGCTCTGTGAGTGACCTCAGGTGCTGTGGA
CAGCCCCAGATTTCAAGAATTGGATCTGCTTTCTTGGGAGTCATCACTGAACTAACGTCC
CACATGGTGTTACTTACTGTAGATGCTCTCTCATGGAGGAGGCCCAGAGCACACATCCTG
ATCGCTTGTGGTACTCAGAGAGGGGGTGCTAACTCTGATGCCCTGGCCAAATTCCAGTTT
AGGGATGTGGGTCTTCTTGCCATTCTAATTGGAAATGTGCATCGCTTTCCATTTTCCCTG
TTGATCTTGGTGCAAACTGCACAAGTCTATTTCTTTGCCCTGATCCCAAGTCTCTAAGAT
GCTGGTATGTATTATATGGGCCAAATTCATGCCTTCTCCTAATGCAGGAAAGTTGAGGAA
TGAGGGAGCTCAGTGTCAAAGTGCCCTGTGGTTGGAGGGGAAACTCTTAGGATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               240-474, + strand, RNAz p=0.825249

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-474, + strand, RNAz p=0.825249

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-474, gnl|bosTau2|chr7 (29541619-29541146)
               

               
               2-474, gnl|Hg17|chr5 (139486577-139487052)
               

               
               2-474, gnl|Mm7|chr18 (36675631-36676085)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-474, gnl|bosTau2|chr7 (29541619-29541146)
               

               
               2-474, gnl|Hg17|chr5 (139486577-139487052)
               

               
               2-474, gnl|Mm7|chr18 (36675631-36676085)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fcc (0.197785)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)

	2-474, gnl\|bosTau2\|chr7 (29541619-29541146)
	2-474, gnl\|Hg17\|chr5 (139486577-139487052)
	2-474, gnl\|Mm7\|chr18 (36675631-36676085)