Non-Coding RNA Search

rfcc30b_m22.y1

Sequence:


               
               ATGAATAGAACTATACTTCTAATCTAAGCATCTCCACTGTAGTGTGTGCCTTTCATAAAG
GAAAAAAGAGAAAAGAAAAGCAAGGCTATGGCCTCAGGATGAAACTGGAACATCCCTGCT
AATTGCCTGCAGAGGACATGTGAGCTGGCACTGTGGGTTAAGGGAAAATGTTCTGCAGAC
CATATACTATGCTCTTTCCAGATCGGCAGTCACATGAGTCTTAGCTATAGGAATCTCAGA
AGTGATCCTCAAGCCTGTAAACATCACATGCTTCAACACTGAGGaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaa

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGAATAGAACTATACTTCTAATCTAAGCATCTCCACTGTAGTGTGTGCCTTTCATAAAG
GAAAAAAGAGAAAAGAAAAGCAAGGCTATGGCCTCAGGATGAAACTGGAACATCCCTGCT
AATTGCCTGCAGAGGACATGTGAGCTGGCACTGTGGGTTAAGGGAAAATGTTCTGCAGAC
CATATACTATGCTCTTTCCAGATCGGCAGTCACATGAGTCTTAGCTATAGGAATCTCAGA
AGTGATCCTCAAGCCTGTAAACATCACATGCTTCAACACTGAGGaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaa

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-286, gnl|bosTau2|chr8 (50235120-50234832)
               

               
               1-286, gnl|canFam2|chr11 (61303456-61303897)
               

               
               1-286, gnl|dasNov1|scaffold_16436 (40340-39862)
               

               
               1-286, gnl|echTel1|scaffold_298700 (32248-32680)
               

               
               1-286, gnl|hg17|chr9 (101413832-101414281)
               

               
               1-286, gnl|Hg17|chr9 (101414241-101413970)
               

               
               1-286, gnl|mm7|chr4 (49677961-49678369)
               

               
               1-286, gnl|Mm7|chr4 (49678330-49678064)
               

               
               1-286, gnl|monDom2|scaffold_5 (85478381-85478858)
               

               
               1-286, gnl|panTro1|chr11 (85661862-85662311)
               

               
               1-286, gnl|rheMac2|chr15 (34636651-34636202)
               

               
               1-286, gnl|rn3|chr5 (66410944-66411352)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-286, gnl|bosTau2|chr8 (50235120-50234832)
               

               
               1-286, gnl|canFam2|chr11 (61303456-61303897)
               

               
               1-286, gnl|dasNov1|scaffold_16436 (40340-39862)
               

               
               1-286, gnl|echTel1|scaffold_298700 (32248-32680)
               

               
               1-286, gnl|hg17|chr9 (101413832-101414281)
               

               
               1-286, gnl|Hg17|chr9 (101414241-101413970)
               

               
               1-286, gnl|mm7|chr4 (49677961-49678369)
               

               
               1-286, gnl|Mm7|chr4 (49678330-49678064)
               

               
               1-286, gnl|monDom2|scaffold_5 (85478381-85478858)
               

               
               1-286, gnl|panTro1|chr11 (85661862-85662311)
               

               
               1-286, gnl|rheMac2|chr15 (34636651-34636202)
               

               
               1-286, gnl|rn3|chr5 (66410944-66411352)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fcc (0.197785)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)

	1-286, gnl\|bosTau2\|chr8 (50235120-50234832)
	1-286, gnl\|canFam2\|chr11 (61303456-61303897)
	1-286, gnl\|dasNov1\|scaffold_16436 (40340-39862)
	1-286, gnl\|echTel1\|scaffold_298700 (32248-32680)
	1-286, gnl\|hg17\|chr9 (101413832-101414281)
	1-286, gnl\|Hg17\|chr9 (101414241-101413970)
	1-286, gnl\|mm7\|chr4 (49677961-49678369)
	1-286, gnl\|Mm7\|chr4 (49678330-49678064)
	1-286, gnl\|monDom2\|scaffold_5 (85478381-85478858)
	1-286, gnl\|panTro1\|chr11 (85661862-85662311)
	1-286, gnl\|rheMac2\|chr15 (34636651-34636202)
	1-286, gnl\|rn3\|chr5 (66410944-66411352)