Non-Coding RNA Search

rfcc33b_j15.y1

Sequence:


               
               atgtggagcatttttgtatgtgcctgctgggcatctgtatgtcttctttggagacatgtc
tgtttactcttctgcccatttttcaattggattatttggtttttttgctgttgagGAGAA
TTTTTTTTAAAAGATGCGTTTAAAAGAAAGTCTCCTTTGCTCGTTTTGCCCTTTCTTTTC
TAAAACCTCATTTAATGGTTGGGTAGGTGAAGGCACTTCCATTCTGTTTTATGCCTTGAA
ATAGCTTGCCAATTCTAAGGGATATACTTCTGCTCTTATAAACAAGGAAAGCTTGCCAAC
AGCTGCAGTACTGGCTAGTCTCACTTCATATGTTTAGTTCCCAAGATAGCTGCCCTTTTT
CTAGCGGAGAGCAGTCAGCTTGACTGTGTCACGAGAATAGACAAACATTTGTTCTGGGAT
CATGAGCCATGGGGGTGTGCTCCCCCACTTAGACCGTGACACATATGCCTGTGTCTTAGG
GTGTTACCTGCAGATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               atgtggagcatttttgtatgtgcctgctgggcatctgtatgtcttctttggagacatgtc
tgtttactcttctgcccatttttcaattggattatttggtttttttgctgttgagGAGAA
TTTTTTTTAAAAGATGCGTTTAAAAGAAAGTCTCCTTTGCTCGTTTTGCCCTTTCTTTTC
TAAAACCTCATTTAATGGTTGGGTAGGTGAAGGCACTTCCATTCTGTTTTATGCCTTGAA
ATAGCTTGCCAATTCTAAGGGATATACTTCTGCTCTTATAAACAAGGAAAGCTTGCCAAC
AGCTGCAGTACTGGCTAGTCTCACTTCATATGTTTAGTTCCCAAGATAGCTGCCCTTTTT
CTAGCGGAGAGCAGTCAGCTTGACTGTGTCACGAGAATAGACAAACATTTGTTCTGGGAT
CATGAGCCATGGGGGTGTGCTCCCCCACTTAGACCGTGACACATATGCCTGTGTCTTAGG
GTGTTACCTGCAGATTA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               105-217, + strand, RNAz p=0.923727
               

               
               214-352, - strand, RNAz p=0.975427

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               105-217, + strand, RNAz p=0.923727
               

               
               214-352, - strand, RNAz p=0.975427

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

Help | Less info


               
               105-497, gnl|bosTau2|chr16 (4814752-4815148)
               

               
               105-497, gnl|canFam2|chr38 (9046550-9045891)
               

               
               105-497, gnl|echTel1|scaffold_309269 (47336-46726)
               

               
               105-497, gnl|hg17|chr1 (189714324-189714927)
               

               
               105-497, gnl|Hg17|chr1 (189714915-189714536)
               

               
               105-497, gnl|loxAfr1|scaffold_27118 (10241-9603)
               

               
               105-497, gnl|mm7|chr1 (143735906-143735335)
               

               
               105-497, gnl|oryCun1|scaffold_180821 (12301-11708)
               

               
               105-497, gnl|panTro1|chr1 (172291076-172291679)
               

               
               105-497, gnl|rheMac2|chr1 (177591922-177591289)
               

               
               105-497, gnl|rn3|chr13 (57660940-57660373)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               105-497, gnl|bosTau2|chr16 (4814752-4815148)
               

               
               105-497, gnl|canFam2|chr38 (9046550-9045891)
               

               
               105-497, gnl|echTel1|scaffold_309269 (47336-46726)
               

               
               105-497, gnl|hg17|chr1 (189714324-189714927)
               

               
               105-497, gnl|Hg17|chr1 (189714915-189714536)
               

               
               105-497, gnl|loxAfr1|scaffold_27118 (10241-9603)
               

               
               105-497, gnl|mm7|chr1 (143735906-143735335)
               

               
               105-497, gnl|oryCun1|scaffold_180821 (12301-11708)
               

               
               105-497, gnl|panTro1|chr1 (172291076-172291679)
               

               
               105-497, gnl|rheMac2|chr1 (177591922-177591289)
               

               
               105-497, gnl|rn3|chr13 (57660940-57660373)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fcc (0.197785)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)

	105-217, + strand, RNAz p=0.923727
	214-352, - strand, RNAz p=0.975427

	105-497, gnl\|bosTau2\|chr16 (4814752-4815148)
	105-497, gnl\|canFam2\|chr38 (9046550-9045891)
	105-497, gnl\|echTel1\|scaffold_309269 (47336-46726)
	105-497, gnl\|hg17\|chr1 (189714324-189714927)
	105-497, gnl\|Hg17\|chr1 (189714915-189714536)
	105-497, gnl\|loxAfr1\|scaffold_27118 (10241-9603)
	105-497, gnl\|mm7\|chr1 (143735906-143735335)
	105-497, gnl\|oryCun1\|scaffold_180821 (12301-11708)
	105-497, gnl\|panTro1\|chr1 (172291076-172291679)
	105-497, gnl\|rheMac2\|chr1 (177591922-177591289)
	105-497, gnl\|rn3\|chr13 (57660940-57660373)