Non-Coding RNA Search

rfce05c_n13.y1

Sequence:


               
               CTGCAGGTTTTTCACAGACAAGTTTTTATTACTTTGTCCTGCATATAGAACCCAAGAAAT
ATAAAAACATCTCCAGAATTACTCAAAGGAGCCACTTTCCCCACCCCCAACCAGCCCCTT
CCCTCCCTGGAGGGGCTCAGATATGGGTGCTGGGGGGTGGCAGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCAGGTTTTTCACAGACAAGTTTTTATTACTTTGTCCTGCATATAGAACCCAAGAAAT
ATAAAAACATCTCCAGAATTACTCAAAGGAGCCACTTTCCCCACCCCCAACCAGCCCCTT
CCCTCCCTGGAGGGGCTCAGATATGGGTGCTGGGGGGTGGCAGGCC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               44-156, - strand, RNAz p=0.829587
               

               
               51-166, - strand, RNAz p=0.950591

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               44-156, - strand, RNAz p=0.829587
               

               
               51-166, - strand, RNAz p=0.950591

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               13-166, gnl|bosTau2|chr3 (75467996-75467841)
               

               
               13-166, gnl|dasNov1|scaffold_194883 (303-999)
               

               
               13-166, gnl|echTel1|scaffold_267001 (3349-2712)
               

               
               13-166, gnl|hg17|chr1 (37850742-37851452)
               

               
               13-166, gnl|Hg17|chr1 (37850742-37850872)
               

               
               13-166, gnl|loxAfr1|scaffold_58811 (1521-2407)
               

               
               13-166, gnl|mm7|chr4 (124362441-124361775)
               

               
               13-166, gnl|oryCun1|scaffold_214111 (146310-145621)
               

               
               13-166, gnl|panTro1|chr1 (38691930-38692642)
               

               
               13-166, gnl|rheMac2|chr19 (19223545-19224253)
               

               
               13-166, gnl|rn3|chr5 (144260369-144259656)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-166, gnl|bosTau2|chr3 (75467996-75467841)
               

               
               13-166, gnl|dasNov1|scaffold_194883 (303-999)
               

               
               13-166, gnl|echTel1|scaffold_267001 (3349-2712)
               

               
               13-166, gnl|hg17|chr1 (37850742-37851452)
               

               
               13-166, gnl|Hg17|chr1 (37850742-37850872)
               

               
               13-166, gnl|loxAfr1|scaffold_58811 (1521-2407)
               

               
               13-166, gnl|mm7|chr4 (124362441-124361775)
               

               
               13-166, gnl|oryCun1|scaffold_214111 (146310-145621)
               

               
               13-166, gnl|panTro1|chr1 (38691930-38692642)
               

               
               13-166, gnl|rheMac2|chr19 (19223545-19224253)
               

               
               13-166, gnl|rn3|chr5 (144260369-144259656)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fce (0.271592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)

	44-156, - strand, RNAz p=0.829587
	51-166, - strand, RNAz p=0.950591

	13-166, gnl\|bosTau2\|chr3 (75467996-75467841)
	13-166, gnl\|dasNov1\|scaffold_194883 (303-999)
	13-166, gnl\|echTel1\|scaffold_267001 (3349-2712)
	13-166, gnl\|hg17\|chr1 (37850742-37851452)
	13-166, gnl\|Hg17\|chr1 (37850742-37850872)
	13-166, gnl\|loxAfr1\|scaffold_58811 (1521-2407)
	13-166, gnl\|mm7\|chr4 (124362441-124361775)
	13-166, gnl\|oryCun1\|scaffold_214111 (146310-145621)
	13-166, gnl\|panTro1\|chr1 (38691930-38692642)
	13-166, gnl\|rheMac2\|chr19 (19223545-19224253)
	13-166, gnl\|rn3\|chr5 (144260369-144259656)