Non-Coding RNA Search

rfce08c_i8.y1

Sequence:


               
               CCGGGCTGCAGGATTTAGCATACTGCCTGTGAATGAAAGGAGGCTTTTGCTAAATTCTTG
TTGCTTAAATGGCGTCTGTTTAGGGATCATGCGCCAAGAAGAGGGTGGGAAGCCATGTGT
GTTTATATATAAGCCAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGGCTGCAGGATTTAGCATACTGCCTGTGAATGAAAGGAGGCTTTTGCTAAATTCTTG
TTGCTTAAATGGCGTCTGTTTAGGGATCATGCGCCAAGAAGAGGGTGGGAAGCCATGTGT
GTTTATATATAAGCCAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               39-141, + strand, RNAz p=0.518276

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-141, + strand, RNAz p=0.518276

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_000834, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_000834, +

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               15-141, gnl|bosTau2|chr5 (56226085-56226211)
               

               
               15-141, gnl|canFam2|chr27 (35896492-35896076)
               

               
               15-141, gnl|echTel1|scaffold_313681 (75565-75192)
               

               
               15-141, gnl|hg17|chr12 (13606155-13606562)
               

               
               15-141, gnl|Hg17|chr12 (13606527-13606401)
               

               
               15-141, gnl|loxAfr1|scaffold_3380 (121997-121602)
               

               
               15-141, gnl|mm7|chr6 (135746125-135746544)
               

               
               15-141, gnl|Mm7|chr6 (135746506-135746366)
               

               
               15-141, gnl|monDom2|scaffold_31 (17397308-17396930)
               

               
               15-141, gnl|oryCun1|scaffold_212419 (117462-117059)
               

               
               15-141, gnl|panTro1|chrUn_random (39854843-39855250)
               

               
               15-141, gnl|rheMac2|chr11 (13929355-13929763)
               

               
               15-141, gnl|rn3|chr4 (172966510-172966909)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-141, gnl|bosTau2|chr5 (56226085-56226211)
               

               
               15-141, gnl|canFam2|chr27 (35896492-35896076)
               

               
               15-141, gnl|echTel1|scaffold_313681 (75565-75192)
               

               
               15-141, gnl|hg17|chr12 (13606155-13606562)
               

               
               15-141, gnl|Hg17|chr12 (13606527-13606401)
               

               
               15-141, gnl|loxAfr1|scaffold_3380 (121997-121602)
               

               
               15-141, gnl|mm7|chr6 (135746125-135746544)
               

               
               15-141, gnl|Mm7|chr6 (135746506-135746366)
               

               
               15-141, gnl|monDom2|scaffold_31 (17397308-17396930)
               

               
               15-141, gnl|oryCun1|scaffold_212419 (117462-117059)
               

               
               15-141, gnl|panTro1|chrUn_random (39854843-39855250)
               

               
               15-141, gnl|rheMac2|chr11 (13929355-13929763)
               

               
               15-141, gnl|rn3|chr4 (172966510-172966909)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fce (0.271592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)

	15-141, gnl\|bosTau2\|chr5 (56226085-56226211)
	15-141, gnl\|canFam2\|chr27 (35896492-35896076)
	15-141, gnl\|echTel1\|scaffold_313681 (75565-75192)
	15-141, gnl\|hg17\|chr12 (13606155-13606562)
	15-141, gnl\|Hg17\|chr12 (13606527-13606401)
	15-141, gnl\|loxAfr1\|scaffold_3380 (121997-121602)
	15-141, gnl\|mm7\|chr6 (135746125-135746544)
	15-141, gnl\|Mm7\|chr6 (135746506-135746366)
	15-141, gnl\|monDom2\|scaffold_31 (17397308-17396930)
	15-141, gnl\|oryCun1\|scaffold_212419 (117462-117059)
	15-141, gnl\|panTro1\|chrUn_random (39854843-39855250)
	15-141, gnl\|rheMac2\|chr11 (13929355-13929763)
	15-141, gnl\|rn3\|chr4 (172966510-172966909)