Non-Coding RNA Search

rfce08c_n1.y1

Sequence:


               
               CCACACTGTTTTTTATATCTGTCATGTACATTGCATTTGATCTGTAACTGCATGACCCTG
GGGTCCTCTGCAGAGCCCTTTCTTTCTGTGTAAAGTAGTGGATCCATCTTGCTTTTGCCT
TATATAAAGCCTACAGTTATGAAAGTGTGGAAAACTGTGGCTTCTCAATAAATAACTATT
GAAATGTCCCAAGAAAAAAAAAAAAAAAAAAAAAAAACTCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACACTGTTTTTTATATCTGTCATGTACATTGCATTTGATCTGTAACTGCATGACCCTG
GGGTCCTCTGCAGAGCCCTTTCTTTCTGTGTAAAGTAGTGGATCCATCTTGCTTTTGCCT
TATATAAAGCCTACAGTTATGAAAGTGTGGAAAACTGTGGCTTCTCAATAAATAACTATT
GAAATGTCCCAAGAAAAAAAAAAAAAAAAAAAAAAAACTCGA

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

Help | Less info


               
               1-194, gnl|bosTau2|chr22 (30243176-30242982)
               

               
               1-194, gnl|canFam2|chr20 (31676004-31675766)
               

               
               1-194, gnl|danRer3|chr6 (23363262-23363011)
               

               
               1-194, gnl|dasNov1|scaffold_51 (48418-48652)
               

               
               1-194, gnl|echTel1|scaffold_286857 (145473-145722)
               

               
               1-194, gnl|fr1|chrUn (44643747-44643531)
               

               
               1-194, gnl|galGal2|chr12 (13123485-13123711)
               

               
               1-194, gnl|hg17|chr3 (62359008-62359235)
               

               
               1-194, gnl|Hg17|chr3 (62359256-62359066)
               

               
               1-194, gnl|loxAfr1|scaffold_2294 (32605-32369)
               

               
               1-194, gnl|mm7|chr14 (10188360-10188597)
               

               
               1-194, gnl|Mm7|chr14 (10188618-10188422)
               

               
               1-194, gnl|monDom2|scaffold_5 (7982951-7983182)
               

               
               1-194, gnl|oryCun1|scaffold_203520 (154105-153869)
               

               
               1-194, gnl|panTro1|chr2 (64140042-64140269)
               

               
               1-194, gnl|rheMac2|chr2 (73990625-73990398)
               

               
               1-194, gnl|rn3|chr15 (14319908-14319647)
               

               
               1-194, gnl|xenTro1|scaffold_703 (576518-576290)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-194, gnl|bosTau2|chr22 (30243176-30242982)
               

               
               1-194, gnl|canFam2|chr20 (31676004-31675766)
               

               
               1-194, gnl|danRer3|chr6 (23363262-23363011)
               

               
               1-194, gnl|dasNov1|scaffold_51 (48418-48652)
               

               
               1-194, gnl|echTel1|scaffold_286857 (145473-145722)
               

               
               1-194, gnl|fr1|chrUn (44643747-44643531)
               

               
               1-194, gnl|galGal2|chr12 (13123485-13123711)
               

               
               1-194, gnl|hg17|chr3 (62359008-62359235)
               

               
               1-194, gnl|Hg17|chr3 (62359256-62359066)
               

               
               1-194, gnl|loxAfr1|scaffold_2294 (32605-32369)
               

               
               1-194, gnl|mm7|chr14 (10188360-10188597)
               

               
               1-194, gnl|Mm7|chr14 (10188618-10188422)
               

               
               1-194, gnl|monDom2|scaffold_5 (7982951-7983182)
               

               
               1-194, gnl|oryCun1|scaffold_203520 (154105-153869)
               

               
               1-194, gnl|panTro1|chr2 (64140042-64140269)
               

               
               1-194, gnl|rheMac2|chr2 (73990625-73990398)
               

               
               1-194, gnl|rn3|chr15 (14319908-14319647)
               

               
               1-194, gnl|xenTro1|scaffold_703 (576518-576290)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fce (0.271592)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)

	1-194, gnl\|bosTau2\|chr22 (30243176-30242982)
	1-194, gnl\|canFam2\|chr20 (31676004-31675766)
	1-194, gnl\|danRer3\|chr6 (23363262-23363011)
	1-194, gnl\|dasNov1\|scaffold_51 (48418-48652)
	1-194, gnl\|echTel1\|scaffold_286857 (145473-145722)
	1-194, gnl\|fr1\|chrUn (44643747-44643531)
	1-194, gnl\|galGal2\|chr12 (13123485-13123711)
	1-194, gnl\|hg17\|chr3 (62359008-62359235)
	1-194, gnl\|Hg17\|chr3 (62359256-62359066)
	1-194, gnl\|loxAfr1\|scaffold_2294 (32605-32369)
	1-194, gnl\|mm7\|chr14 (10188360-10188597)
	1-194, gnl\|Mm7\|chr14 (10188618-10188422)
	1-194, gnl\|monDom2\|scaffold_5 (7982951-7983182)
	1-194, gnl\|oryCun1\|scaffold_203520 (154105-153869)
	1-194, gnl\|panTro1\|chr2 (64140042-64140269)
	1-194, gnl\|rheMac2\|chr2 (73990625-73990398)
	1-194, gnl\|rn3\|chr15 (14319908-14319647)
	1-194, gnl\|xenTro1\|scaffold_703 (576518-576290)