Non-Coding RNA Search

rfce22c_c12.y1

Sequence:


               
               CCGGGCTGCAGGCAATTTTAATTTTGATTCTTAAATTCATGAACTCCTGATAAGAAATGT
GCTCCATTGGAAGATAGAAATGTTATTGAAAAGCAAGTGCATGACTGCTTCTATACAGTA
GTCAGGAAAATTGTTCTCTGCCCTTTGTGTCTCAGACTGAAGCTACTTCAATAAGCTGGA
AGATTCTTACTCAACTGTGTTTTCCTGCCGACGAACCTGGGTCTAGAGGATTTTCAAAGG
TTATCATTTCATTCCAGCAAAAACATCCACTTCTTCTATTAGGTAGACACTCGAAGGTGA
TTGTTGTATTGCTTTGGATTAAGCTATATTAAAATGGTCAAATCGGTTAGGTTTAGACTA
AGCCAATATTAGAGAAATAAGCAAAGGGTCGATTTTTTTTTTTTTTCCCCCATTTCATGC
AGCTTTGTATCACAGGACACTTTCCCTGTCCACTTTCTTAAATCCTTTCCCAGAGTCACT
GCCTCCTTTGCACACTCTCTTTCTTAAATAGCAAGACTAAGACCTTCTCAGCAGAAATAT
AAATAAGGCAGATTGGAAATATACAAGATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGGCTGCAGGCAATTTTAATTTTGATTCTTAAATTCATGAACTCCTGATAAGAAATGT
GCTCCATTGGAAGATAGAAATGTTATTGAAAAGCAAGTGCATGACTGCTTCTATACAGTA
GTCAGGAAAATTGTTCTCTGCCCTTTGTGTCTCAGACTGAAGCTACTTCAATAAGCTGGA
AGATTCTTACTCAACTGTGTTTTCCTGCCGACGAACCTGGGTCTAGAGGATTTTCAAAGG
TTATCATTTCATTCCAGCAAAAACATCCACTTCTTCTATTAGGTAGACACTCGAAGGTGA
TTGTTGTATTGCTTTGGATTAAGCTATATTAAAATGGTCAAATCGGTTAGGTTTAGACTA
AGCCAATATTAGAGAAATAAGCAAAGGGTCGATTTTTTTTTTTTTTCCCCCATTTCATGC
AGCTTTGTATCACAGGACACTTTCCCTGTCCACTTTCTTAAATCCTTTCCCAGAGTCACT
GCCTCCTTTGCACACTCTCTTTCTTAAATAGCAAGACTAAGACCTTCTCAGCAGAAATAT
AAATAAGGCAGATTGGAAATATACAAGATAT

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               14-165, gnl|bosTau2|chr4 (42643009-42643158)
               

               
               14-165, gnl|canFam2|chr14 (18202773-18203259)
               

               
               14-165, gnl|echTel1|scaffold_312209 (6020-6497)
               

               
               14-165, gnl|hg17|chr7 (88614391-88614889)
               

               
               14-165, gnl|Hg17|chr7 (88614627-88614781)
               

               
               14-165, gnl|mm7|chr5 (6803102-6802634)
               

               
               14-165, gnl|Mm7|chr5 (6802876-6802732)
               

               
               14-165, gnl|monDom2|scaffold_7 (57216659-57217123)
               

               
               14-165, gnl|oryCun1|scaffold_178293 (3862-3393)
               

               
               14-165, gnl|panTro1|chr6 (90140630-90141130)
               

               
               14-165, gnl|rn3|chr4 (23776627-23777084)
               


               
               216-558, gnl|bosTau2|chr4 (42643182-42643516)
               

               
               216-558, gnl|Hg17|chr7 (88614834-88615182)
               

               
               216-558, gnl|Mm7|chr5 (6802698-6802333)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-165, gnl|bosTau2|chr4 (42643009-42643158)
               

               
               14-165, gnl|canFam2|chr14 (18202773-18203259)
               

               
               14-165, gnl|echTel1|scaffold_312209 (6020-6497)
               

               
               14-165, gnl|hg17|chr7 (88614391-88614889)
               

               
               14-165, gnl|Hg17|chr7 (88614627-88614781)
               

               
               14-165, gnl|mm7|chr5 (6803102-6802634)
               

               
               14-165, gnl|Mm7|chr5 (6802876-6802732)
               

               
               14-165, gnl|monDom2|scaffold_7 (57216659-57217123)
               

               
               14-165, gnl|oryCun1|scaffold_178293 (3862-3393)
               

               
               14-165, gnl|panTro1|chr6 (90140630-90141130)
               

               
               14-165, gnl|rn3|chr4 (23776627-23777084)
               


               
               216-558, gnl|bosTau2|chr4 (42643182-42643516)
               

               
               216-558, gnl|Hg17|chr7 (88614834-88615182)
               

               
               216-558, gnl|Mm7|chr5 (6802698-6802333)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fce (0.271592)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)

	14-165, gnl\|bosTau2\|chr4 (42643009-42643158)
	14-165, gnl\|canFam2\|chr14 (18202773-18203259)
	14-165, gnl\|echTel1\|scaffold_312209 (6020-6497)
	14-165, gnl\|hg17\|chr7 (88614391-88614889)
	14-165, gnl\|Hg17\|chr7 (88614627-88614781)
	14-165, gnl\|mm7\|chr5 (6803102-6802634)
	14-165, gnl\|Mm7\|chr5 (6802876-6802732)
	14-165, gnl\|monDom2\|scaffold_7 (57216659-57217123)
	14-165, gnl\|oryCun1\|scaffold_178293 (3862-3393)
	14-165, gnl\|panTro1\|chr6 (90140630-90141130)
	14-165, gnl\|rn3\|chr4 (23776627-23777084)

	216-558, gnl\|bosTau2\|chr4 (42643182-42643516)
	216-558, gnl\|Hg17\|chr7 (88614834-88615182)
	216-558, gnl\|Mm7\|chr5 (6802698-6802333)