Non-Coding RNA Search

rfce25c_d23.y1

Sequence:


               
               CGCAGCACGCGCAGCGCCAGCCCCACCTTCTCCAGGTAGGAGCTCCCGCCCGGCCTCTCG
CCATCCTCCTGCGGCTCGTCGGACACGGCGAGGGACACGTAGTAGGGGAAGATGGCCAGG
ATGTCGATGATGTTCAGGGGCCCTTGGAAGAACTGGCACTTGTCCCGGGCCTGGACAAAG
CGCAGTGCAGAACTCCAGGGAAAACCAGGCCACGCAGATGGTCTCCACGATGAAAATGTA
GTAGCACTTCTGCGAGCACTCCCCCTGGAGAGGCGACAAAATGTGGGTTGAGAGGGGACG
GGCAGCCCCACTGGAAATGGAAAAATAACCACCCCGAAAAGCAATTCCACAGAGCGGTGT
CCATACCGATATCGACTCCGTGTATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCAGCACGCGCAGCGCCAGCCCCACCTTCTCCAGGTAGGAGCTCCCGCCCGGCCTCTCG
CCATCCTCCTGCGGCTCGTCGGACACGGCGAGGGACACGTAGTAGGGGAAGATGGCCAGG
ATGTCGATGATGTTCAGGGGCCCTTGGAAGAACTGGCACTTGTCCCGGGCCTGGACAAAG
CGCAGTGCAGAACTCCAGGGAAAACCAGGCCACGCAGATGGTCTCCACGATGAAAATGTA
GTAGCACTTCTGCGAGCACTCCCCCTGGAGAGGCGACAAAATGTGGGTTGAGAGGGGACG
GGCAGCCCCACTGGAAATGGAAAAATAACCACCCCGAAAAGCAATTCCACAGAGCGGTGT
CCATACCGATATCGACTCCGTGTATAC

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               1-387, gnl|bosTau2|chr18 (10692592-10692214)
               

               
               1-387, gnl|canFam2|chr5 (71150862-71150183)
               

               
               1-387, gnl|danRer3|chrNA (214504733-214504055)
               

               
               1-387, gnl|dasNov1|scaffold_58564 (454-1137)
               

               
               1-387, gnl|echTel1|scaffold_226217 (2728-2033)
               

               
               1-387, gnl|fr1|chrUn (20994291-20994953)
               

               
               1-387, gnl|galGal2|chr11 (17028467-17029139)
               

               
               1-387, gnl|hg17|chr16 (82813462-82814146)
               

               
               1-387, gnl|Hg17|chr16 (82813865-82814209)
               

               
               1-387, gnl|loxAfr1|scaffold_58498 (3551-2867)
               

               
               1-387, gnl|mm7|chr8 (118258931-118259608)
               

               
               1-387, gnl|monDom2|scaffold_23 (16433902-16433226)
               

               
               1-387, gnl|oryCun1|scaffold_139202 (2853-2164)
               

               
               1-387, gnl|panTro1|chr18 (77703662-77704346)
               

               
               1-387, gnl|rheMac2|chr20 (82353225-82353909)
               

               
               1-387, gnl|rn3|chr19 (49887673-49888350)
               

               
               1-387, gnl|tetNig1|chr21 (5547580-5546915)
               

               
               1-387, gnl|xenTro1|scaffold_79 (2147642-2148323)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-387, gnl|bosTau2|chr18 (10692592-10692214)
               

               
               1-387, gnl|canFam2|chr5 (71150862-71150183)
               

               
               1-387, gnl|danRer3|chrNA (214504733-214504055)
               

               
               1-387, gnl|dasNov1|scaffold_58564 (454-1137)
               

               
               1-387, gnl|echTel1|scaffold_226217 (2728-2033)
               

               
               1-387, gnl|fr1|chrUn (20994291-20994953)
               

               
               1-387, gnl|galGal2|chr11 (17028467-17029139)
               

               
               1-387, gnl|hg17|chr16 (82813462-82814146)
               

               
               1-387, gnl|Hg17|chr16 (82813865-82814209)
               

               
               1-387, gnl|loxAfr1|scaffold_58498 (3551-2867)
               

               
               1-387, gnl|mm7|chr8 (118258931-118259608)
               

               
               1-387, gnl|monDom2|scaffold_23 (16433902-16433226)
               

               
               1-387, gnl|oryCun1|scaffold_139202 (2853-2164)
               

               
               1-387, gnl|panTro1|chr18 (77703662-77704346)
               

               
               1-387, gnl|rheMac2|chr20 (82353225-82353909)
               

               
               1-387, gnl|rn3|chr19 (49887673-49888350)
               

               
               1-387, gnl|tetNig1|chr21 (5547580-5546915)
               

               
               1-387, gnl|xenTro1|scaffold_79 (2147642-2148323)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fce (0.271592)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)

	1-387, gnl\|bosTau2\|chr18 (10692592-10692214)
	1-387, gnl\|canFam2\|chr5 (71150862-71150183)
	1-387, gnl\|danRer3\|chrNA (214504733-214504055)
	1-387, gnl\|dasNov1\|scaffold_58564 (454-1137)
	1-387, gnl\|echTel1\|scaffold_226217 (2728-2033)
	1-387, gnl\|fr1\|chrUn (20994291-20994953)
	1-387, gnl\|galGal2\|chr11 (17028467-17029139)
	1-387, gnl\|hg17\|chr16 (82813462-82814146)
	1-387, gnl\|Hg17\|chr16 (82813865-82814209)
	1-387, gnl\|loxAfr1\|scaffold_58498 (3551-2867)
	1-387, gnl\|mm7\|chr8 (118258931-118259608)
	1-387, gnl\|monDom2\|scaffold_23 (16433902-16433226)
	1-387, gnl\|oryCun1\|scaffold_139202 (2853-2164)
	1-387, gnl\|panTro1\|chr18 (77703662-77704346)
	1-387, gnl\|rheMac2\|chr20 (82353225-82353909)
	1-387, gnl\|rn3\|chr19 (49887673-49888350)
	1-387, gnl\|tetNig1\|chr21 (5547580-5546915)
	1-387, gnl\|xenTro1\|scaffold_79 (2147642-2148323)