Non-Coding RNA Search

rfce34c_i24.y1

Sequence:


               
               CTGCAGGCTTGGACTCTAGGGGAAGCCGCCACCAGGAACCCCTCTGCCAATCCCCACCCT
GCACCCTGGGAACTGCAGTAACTTATTTTCAAAGGCTTTAAACACAGAGATCCTCTCAGC
AGCCGTGGGCCTGCCCTTGTCCCAGCCCTGCCATGTCGGGGTCCAGCCTCCGGGACCGGC
GCTGCCCACCAAACGGCAAATCCAAAGTTCTTTTAAAACTGAAACACACACACAACCAAA
AAAAAAAAAAAAAAAAAAAAAACTCGAGACTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCAGGCTTGGACTCTAGGGGAAGCCGCCACCAGGAACCCCTCTGCCAATCCCCACCCT
GCACCCTGGGAACTGCAGTAACTTATTTTCAAAGGCTTTAAACACAGAGATCCTCTCAGC
AGCCGTGGGCCTGCCCTTGTCCCAGCCCTGCCATGTCGGGGTCCAGCCTCCGGGACCGGC
GCTGCCCACCAAACGGCAAATCCAAAGTTCTTTTAAAACTGAAACACACACACAACCAAA
AAAAAAAAAAAAAAAAAAAAAACTCGAGACTAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               122-233, + strand, RNAz p=0.809084

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               122-233, + strand, RNAz p=0.809084

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AB051549, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AB051549, +

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               6-245, gnl|bosTau2|chr10 (14682808-14683049)
               

               
               6-245, gnl|canFam2|chr8 (6756142-6755868)
               

               
               6-245, gnl|echTel1|scaffold_303279 (4876-4531)
               

               
               6-245, gnl|hg17|chr13 (46484035-46484298)
               

               
               6-245, gnl|Hg17|chr14 (23060272-23060023)
               

               
               6-245, gnl|loxAfr1|scaffold_105138 (6971-7314)
               

               
               6-245, gnl|mm7|chr14 (49928478-49928125)
               

               
               6-245, gnl|Mm7|chr14 (49928479-49928224)
               

               
               6-245, gnl|monDom2|scaffold_12 (26159777-26160081)
               

               
               6-245, gnl|oryCun1|scaffold_204398 (89330-89069)
               

               
               6-245, gnl|panTro1|chr14_random (12518311-12518575)
               

               
               6-245, gnl|rheMac2|chr17 (25841495-25841766)
               

               
               6-245, gnl|rn3|chr15 (55346900-55346613)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-245, gnl|bosTau2|chr10 (14682808-14683049)
               

               
               6-245, gnl|canFam2|chr8 (6756142-6755868)
               

               
               6-245, gnl|echTel1|scaffold_303279 (4876-4531)
               

               
               6-245, gnl|hg17|chr13 (46484035-46484298)
               

               
               6-245, gnl|Hg17|chr14 (23060272-23060023)
               

               
               6-245, gnl|loxAfr1|scaffold_105138 (6971-7314)
               

               
               6-245, gnl|mm7|chr14 (49928478-49928125)
               

               
               6-245, gnl|Mm7|chr14 (49928479-49928224)
               

               
               6-245, gnl|monDom2|scaffold_12 (26159777-26160081)
               

               
               6-245, gnl|oryCun1|scaffold_204398 (89330-89069)
               

               
               6-245, gnl|panTro1|chr14_random (12518311-12518575)
               

               
               6-245, gnl|rheMac2|chr17 (25841495-25841766)
               

               
               6-245, gnl|rn3|chr15 (55346900-55346613)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fce (0.271592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)

	6-245, gnl\|bosTau2\|chr10 (14682808-14683049)
	6-245, gnl\|canFam2\|chr8 (6756142-6755868)
	6-245, gnl\|echTel1\|scaffold_303279 (4876-4531)
	6-245, gnl\|hg17\|chr13 (46484035-46484298)
	6-245, gnl\|Hg17\|chr14 (23060272-23060023)
	6-245, gnl\|loxAfr1\|scaffold_105138 (6971-7314)
	6-245, gnl\|mm7\|chr14 (49928478-49928125)
	6-245, gnl\|Mm7\|chr14 (49928479-49928224)
	6-245, gnl\|monDom2\|scaffold_12 (26159777-26160081)
	6-245, gnl\|oryCun1\|scaffold_204398 (89330-89069)
	6-245, gnl\|panTro1\|chr14_random (12518311-12518575)
	6-245, gnl\|rheMac2\|chr17 (25841495-25841766)
	6-245, gnl\|rn3\|chr15 (55346900-55346613)