Non-Coding RNA Search

rfhi4004b_o20.y1

Sequence:


               
               CAACTTCTTTCCTATCGAATTCCAGGCATCCTTCCAACTCCTATAAACATGCAAATACTT
GTTATCTCACGCTGTTCCACTGACTGAGAAAACACCAAAAAAGAGAAAAAAAAAAAAAAA
AAGAAGAAAGGAAAAGGAAACCCAAGACAAAGAAGGGGGAAGGAAAATAAACTTGGCCAC
CCCACCCCCCTTCTTCCTACCCCCTTGTCTAGAGCACCATACCGCTCACAGACTCTTTAC
AAATACCCATTTGGCTCCTAAGGTTGGAGCCTGGGATGGGCAGGGAGCCCACGAAACTCT
AACCAAACTGGAGATGGGTGGGGAGAAGTGCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACTTCTTTCCTATCGAATTCCAGGCATCCTTCCAACTCCTATAAACATGCAAATACTT
GTTATCTCACGCTGTTCCACTGACTGAGAAAACACCAAAAAAGAGAAAAAAAAAAAAAAA
AAGAAGAAAGGAAAAGGAAACCCAAGACAAAGAAGGGGGAAGGAAAATAAACTTGGCCAC
CCCACCCCCCTTCTTCCTACCCCCTTGTCTAGAGCACCATACCGCTCACAGACTCTTTAC
AAATACCCATTTGGCTCCTAAGGTTGGAGCCTGGGATGGGCAGGGAGCCCACGAAACTCT
AACCAAACTGGAGATGGGTGGGGAGAAGTGCTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               129-334, - strand, RNAz p=0.996511

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               129-334, - strand, RNAz p=0.996511

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               129-266, DB802678 full-length enriched swine cDNA library, adult skin Sus 
(dbj|DB802678.1|), blast E-value=0, identity=99.28% 
               

               
               132-313, BX283301 NIH_MGC_100 Homo sapiens cDNA clone IMAGp958D222025 ; 
(emb|BX283301.1|), blast E-value=3e-37, identity=86.81% 
               

               
               132-313, AGENCOURT_6715482 NIH_MGC_100 Homo sapiens cDNA clone IMAGE 
(gb|BM928251.1|), blast E-value=3e-37, identity=86.81% 
               

               
               132-313, UI-E-EJ1-ajh-i-18-0-UI.r1 UI-E-EJ1 Homo sapiens cDNA clone 
(gb|BM930209.1|), blast E-value=3e-37, identity=86.81% 
               

               
               132-313, if25d09.y5 Melton Normalized Human Islet 4 N4-HIS 1 Homo sapiens 
(gb|CK819828.1|), blast E-value=3e-37, identity=86.81% 
               

               
               132-313, KB-EST0005722 BPS7 Homo sapiens cDNA, mRNA sequence (gb|DT220638.1|), 
blast E-value=3e-37, identity=86.81%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               129-266, DB802678 full-length enriched swine cDNA library, adult skin Sus 
(dbj|DB802678.1|), blast E-value=0, identity=99.28% 
               

               
               132-313, BX283301 NIH_MGC_100 Homo sapiens cDNA clone IMAGp958D222025 ; 
(emb|BX283301.1|), blast E-value=3e-37, identity=86.81% 
               

               
               132-313, AGENCOURT_6715482 NIH_MGC_100 Homo sapiens cDNA clone IMAGE 
(gb|BM928251.1|), blast E-value=3e-37, identity=86.81% 
               

               
               132-313, UI-E-EJ1-ajh-i-18-0-UI.r1 UI-E-EJ1 Homo sapiens cDNA clone 
(gb|BM930209.1|), blast E-value=3e-37, identity=86.81% 
               

               
               132-313, if25d09.y5 Melton Normalized Human Islet 4 N4-HIS 1 Homo sapiens 
(gb|CK819828.1|), blast E-value=3e-37, identity=86.81% 
               

               
               132-313, KB-EST0005722 BPS7 Homo sapiens cDNA, mRNA sequence (gb|DT220638.1|), 
blast E-value=3e-37, identity=86.81%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               114-334, gnl|bosTau2|chr10 (14682536-14682756)
               

               
               114-334, gnl|Hg17|chr14 (23060582-23060334)
               

               
               114-334, gnl|Mm7|chr14 (49928746-49928526)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               114-334, gnl|bosTau2|chr10 (14682536-14682756)
               

               
               114-334, gnl|Hg17|chr14 (23060582-23060334)
               

               
               114-334, gnl|Mm7|chr14 (49928746-49928526)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fhi (0.169578)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)

	129-266, DB802678 full-length enriched swine cDNA library, adult skin Sus (dbj\|DB802678.1\|), blast E-value=0, identity=99.28%
	132-313, BX283301 NIH_MGC_100 Homo sapiens cDNA clone IMAGp958D222025 ; (emb\|BX283301.1\|), blast E-value=3e-37, identity=86.81%
	132-313, AGENCOURT_6715482 NIH_MGC_100 Homo sapiens cDNA clone IMAGE (gb\|BM928251.1\|), blast E-value=3e-37, identity=86.81%
	132-313, UI-E-EJ1-ajh-i-18-0-UI.r1 UI-E-EJ1 Homo sapiens cDNA clone (gb\|BM930209.1\|), blast E-value=3e-37, identity=86.81%
	132-313, if25d09.y5 Melton Normalized Human Islet 4 N4-HIS 1 Homo sapiens (gb\|CK819828.1\|), blast E-value=3e-37, identity=86.81%
	132-313, KB-EST0005722 BPS7 Homo sapiens cDNA, mRNA sequence (gb\|DT220638.1\|), blast E-value=3e-37, identity=86.81%

	114-334, gnl\|bosTau2\|chr10 (14682536-14682756)
	114-334, gnl\|Hg17\|chr14 (23060582-23060334)
	114-334, gnl\|Mm7\|chr14 (49928746-49928526)