Non-Coding RNA Search

rfhi4011b_p2.y1

Sequence:


               
               TTAAAGCCTTGCATCATACCATATTGCTGGTTCAACACCACAAAGAAATCAATATATTCT
TTACTCTTTTTTTTTGAAACATATATGCTGTATAGGTTTTAAAGCAATATGAATGAGAGG
TTGTGCTTTTAGTTACTCACCACTATAGATCCAAGTGTGATTTCACCTTCCTTTACATAG
AGATAACCCTGAGACTAGATCCCTGGAGTTATGGGCGGATATATGTTGAAAGATGCGTTT
GTCTGATGTAGGATGCCAAGAAATAGGACCCAAGGCAACAATGCTCAACTCTGTTAACTT
CTGTTACTATAAATAAAGGCATGTGCCTAGTTTTGATACaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
aa

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAAGCCTTGCATCATACCATATTGCTGGTTCAACACCACAAAGAAATCAATATATTCT
TTACTCTTTTTTTTTGAAACATATATGCTGTATAGGTTTTAAAGCAATATGAATGAGAGG
TTGTGCTTTTAGTTACTCACCACTATAGATCCAAGTGTGATTTCACCTTCCTTTACATAG
AGATAACCCTGAGACTAGATCCCTGGAGTTATGGGCGGATATATGTTGAAAGATGCGTTT
GTCTGATGTAGGATGCCAAGAAATAGGACCCAAGGCAACAATGCTCAACTCTGTTAACTT
CTGTTACTATAAATAAAGGCATGTGCCTAGTTTTGATACaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
aa

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               3-115, + strand, RNAz p=0.669341

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-115, + strand, RNAz p=0.669341

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               3-343, gnl|bosTau2|chr8 (9566521-9566869)
               

               
               3-343, gnl|canFam2|chr11 (49028104-49028388)
               

               
               3-343, gnl|dasNov1|scaffold_3803 (14600-14882)
               

               
               3-343, gnl|echTel1|scaffold_313931 (56431-56715)
               

               
               3-343, gnl|galGal2|chrZ_random (2940124-2940411)
               

               
               3-343, gnl|hg17|chr9 (27938031-27938318)
               

               
               3-343, gnl|Hg17|chr9 (27938415-27938076)
               

               
               3-343, gnl|loxAfr1|scaffold_477 (44424-44133)
               

               
               3-343, gnl|mm7|chr4 (35846035-35846318)
               

               
               3-343, gnl|Mm7|chr4 (35846407-35846077)
               

               
               3-343, gnl|monDom2|scaffold_19 (26104915-26105212)
               

               
               3-343, gnl|oryCun1|scaffold_183489 (145642-145923)
               

               
               3-343, gnl|rheMac2|chr15 (49163534-49163251)
               

               
               3-343, gnl|rn3|chr5 (52476872-52477155)
               

               
               3-343, gnl|xenTro1|scaffold_155 (330473-330171)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-343, gnl|bosTau2|chr8 (9566521-9566869)
               

               
               3-343, gnl|canFam2|chr11 (49028104-49028388)
               

               
               3-343, gnl|dasNov1|scaffold_3803 (14600-14882)
               

               
               3-343, gnl|echTel1|scaffold_313931 (56431-56715)
               

               
               3-343, gnl|galGal2|chrZ_random (2940124-2940411)
               

               
               3-343, gnl|hg17|chr9 (27938031-27938318)
               

               
               3-343, gnl|Hg17|chr9 (27938415-27938076)
               

               
               3-343, gnl|loxAfr1|scaffold_477 (44424-44133)
               

               
               3-343, gnl|mm7|chr4 (35846035-35846318)
               

               
               3-343, gnl|Mm7|chr4 (35846407-35846077)
               

               
               3-343, gnl|monDom2|scaffold_19 (26104915-26105212)
               

               
               3-343, gnl|oryCun1|scaffold_183489 (145642-145923)
               

               
               3-343, gnl|rheMac2|chr15 (49163534-49163251)
               

               
               3-343, gnl|rn3|chr5 (52476872-52477155)
               

               
               3-343, gnl|xenTro1|scaffold_155 (330473-330171)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               fhi (0.169578)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)

	3-343, gnl\|bosTau2\|chr8 (9566521-9566869)
	3-343, gnl\|canFam2\|chr11 (49028104-49028388)
	3-343, gnl\|dasNov1\|scaffold_3803 (14600-14882)
	3-343, gnl\|echTel1\|scaffold_313931 (56431-56715)
	3-343, gnl\|galGal2\|chrZ_random (2940124-2940411)
	3-343, gnl\|hg17\|chr9 (27938031-27938318)
	3-343, gnl\|Hg17\|chr9 (27938415-27938076)
	3-343, gnl\|loxAfr1\|scaffold_477 (44424-44133)
	3-343, gnl\|mm7\|chr4 (35846035-35846318)
	3-343, gnl\|Mm7\|chr4 (35846407-35846077)
	3-343, gnl\|monDom2\|scaffold_19 (26104915-26105212)
	3-343, gnl\|oryCun1\|scaffold_183489 (145642-145923)
	3-343, gnl\|rheMac2\|chr15 (49163534-49163251)
	3-343, gnl\|rn3\|chr5 (52476872-52477155)
	3-343, gnl\|xenTro1\|scaffold_155 (330473-330171)