Non-Coding RNA Search

rfhi4012b_f21.y1

Sequence:


               
               CAGTACCCGACAGCACACCCCCTGGTCCAGGCCCAGCAGTGGACTTGGTGAGAGCCGCCC
CCTCCGAGACTCGCGGCTTCAGGCCCAGGCCCCACCCCGGCGGCGGAGGCGAGGAGGACT
CGGCCTTTACGATGGTTCTTATAGTATTATAATTATTATGATGGCGTCGAGTTGACTCTC
GGCTCCATTGGGGAGGTTGCCTGCACCTCCGTGGAGAGGCAGATCCCACCCAACCAGCTC
TGCCTCACCCCTCTCTCTGTTTGAACCTTTGGAGAGGGCTGAACCCTAAGCCGTGTTTAC
AGAATGTTTGCGCAGCTTCGCTTCTCTGCCTCTCCCCGGGGACCGAGTGGTCCCAGCGTT
AATGTCCTCACTTGAGAAGGAGAAAAAGACATCCCCAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTACCCGACAGCACACCCCCTGGTCCAGGCCCAGCAGTGGACTTGGTGAGAGCCGCCC
CCTCCGAGACTCGCGGCTTCAGGCCCAGGCCCCACCCCGGCGGCGGAGGCGAGGAGGACT
CGGCCTTTACGATGGTTCTTATAGTATTATAATTATTATGATGGCGTCGAGTTGACTCTC
GGCTCCATTGGGGAGGTTGCCTGCACCTCCGTGGAGAGGCAGATCCCACCCAACCAGCTC
TGCCTCACCCCTCTCTCTGTTTGAACCTTTGGAGAGGGCTGAACCCTAAGCCGTGTTTAC
AGAATGTTTGCGCAGCTTCGCTTCTCTGCCTCTCCCCGGGGACCGAGTGGTCCCAGCGTT
AATGTCCTCACTTGAGAAGGAGAAAAAGACATCCCCAACC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-301, - strand, RNAz p=0.999982

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-301, - strand, RNAz p=0.999982

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               247-347, - strand, RNAmicro p=0.954836

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               247-347, - strand, RNAmicro p=0.954836

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               80-301, BP384657 Homo sapiens pancreatic islet Homo sapiens cDNA clone 
(dbj|BP384657.1|), blast E-value=2e-23, identity=82.63% 
               

               
               80-301, BP390057 Homo sapiens pancreatic islet Homo sapiens cDNA clone 
(dbj|BP390057.1|), blast E-value=2e-23, identity=82.63% 
               

               
               80-301, im09d06.y1 Human insulinoma Homo sapiens cDNA clone IMAGE 
(gb|BQ787392.1|), blast E-value=2e-23, identity=82.63% 
               

               
               80-301, ip37b07.y1 HR85 islet Homo sapiens cDNA clone IMAGE (gb|CA848623.1|), 
blast E-value=2e-23, identity=82.63% 
               

               
               199-301, 692236 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CB441730.1|), 
blast E-value=3e-28, identity=92.23% 
               

               
               199-184, LB0113.CR_J13 GC_BGC-11 Bos taurus cDNA clone IMAGE (gb|DT720065.1|), 
blast E-value=2e-20, identity=88.57%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               80-301, BP384657 Homo sapiens pancreatic islet Homo sapiens cDNA clone 
(dbj|BP384657.1|), blast E-value=2e-23, identity=82.63% 
               

               
               80-301, BP390057 Homo sapiens pancreatic islet Homo sapiens cDNA clone 
(dbj|BP390057.1|), blast E-value=2e-23, identity=82.63% 
               

               
               80-301, im09d06.y1 Human insulinoma Homo sapiens cDNA clone IMAGE 
(gb|BQ787392.1|), blast E-value=2e-23, identity=82.63% 
               

               
               80-301, ip37b07.y1 HR85 islet Homo sapiens cDNA clone IMAGE (gb|CA848623.1|), 
blast E-value=2e-23, identity=82.63% 
               

               
               199-301, 692236 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CB441730.1|), 
blast E-value=3e-28, identity=92.23% 
               

               
               199-184, LB0113.CR_J13 GC_BGC-11 Bos taurus cDNA clone IMAGE (gb|DT720065.1|), 
blast E-value=2e-20, identity=88.57%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-400, gnl|bosTau2|chr13 (25627769-25628179)
               

               
               1-400, gnl|Hg17|chr20 (21440611-21440201)
               

               
               1-400, gnl|Mm7|chr2 (146924902-146924475)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-400, gnl|bosTau2|chr13 (25627769-25628179)
               

               
               1-400, gnl|Hg17|chr20 (21440611-21440201)
               

               
               1-400, gnl|Mm7|chr2 (146924902-146924475)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fhi (0.169578)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)

	80-301, BP384657 Homo sapiens pancreatic islet Homo sapiens cDNA clone (dbj\|BP384657.1\|), blast E-value=2e-23, identity=82.63%
	80-301, BP390057 Homo sapiens pancreatic islet Homo sapiens cDNA clone (dbj\|BP390057.1\|), blast E-value=2e-23, identity=82.63%
	80-301, im09d06.y1 Human insulinoma Homo sapiens cDNA clone IMAGE (gb\|BQ787392.1\|), blast E-value=2e-23, identity=82.63%
	80-301, ip37b07.y1 HR85 islet Homo sapiens cDNA clone IMAGE (gb\|CA848623.1\|), blast E-value=2e-23, identity=82.63%
	199-301, 692236 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb\|CB441730.1\|), blast E-value=3e-28, identity=92.23%
	199-184, LB0113.CR_J13 GC_BGC-11 Bos taurus cDNA clone IMAGE (gb\|DT720065.1\|), blast E-value=2e-20, identity=88.57%

	1-400, gnl\|bosTau2\|chr13 (25627769-25628179)
	1-400, gnl\|Hg17\|chr20 (21440611-21440201)
	1-400, gnl\|Mm7\|chr2 (146924902-146924475)